View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_high_12 (Length: 243)
Name: NF15123_high_12
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_high_12 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 148756 - 148518
Alignment:
| Q |
1 |
caacttcattcgggataatccacgctgaacctttttccatcaaacctatttgttttgctttttcacaaagcatgttagccaactctaaagaagaatgaac |
100 |
Q |
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| T |
148756 |
caacttcatttgggataatccacgccgaacctttttccatcaaacctatttgttttgctttctcacaaataatattagccaactctaaagaagaatgaac |
148657 |
T |
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| Q |
101 |
aatcaagaataccctattactctttcttttcagcttattaagctctttttcaattatatattttgggtccgaaagagttgataacgaaggaaaagctaaa |
200 |
Q |
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| T |
148656 |
aatcaagaataccctattactctttcttttcagcttattaagctcttcttcaattgtagattttgggtctgaaagtgttgataacgaaggaaaagctaaa |
148557 |
T |
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| Q |
201 |
tggtcatcaatctcagaaccaacaagtcttagagaataa |
239 |
Q |
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| T |
148556 |
tggtcatcaatctcagaaccaacaagtcttagagaataa |
148518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 140147 - 139909
Alignment:
| Q |
1 |
caacttcattcgggataatccacgctgaacctttttccatcaaacctatttgttttgctttttcacaaagcatgttagccaactctaaagaagaatgaac |
100 |
Q |
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| T |
140147 |
caacttcattcgggataatccacgccgaacctttttccatcaaacctatttcttttgctttttcacaaagaatgttagccaactctaaagaagaatgaac |
140048 |
T |
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| Q |
101 |
aatcaagaataccctattactctttcttttcagcttattaagctctttttcaattatatattttgggtccgaaagagttgataacgaaggaaaagctaaa |
200 |
Q |
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| T |
140047 |
aatcaagaataccctattactcttctttttcaagctattaagctctttttcaatcatagattttggatctgaaagagttgctaacgaaggaaaagctaaa |
139948 |
T |
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| Q |
201 |
tggtcatcaatctcagaaccaacaagtcttagagaataa |
239 |
Q |
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| T |
139947 |
tggttatcaatctcagaaccaacaagtctaagggaataa |
139909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24897472 - 24897236
Alignment:
| Q |
1 |
caacttcattcgggataatccacgctgaacctttttccatcaaacctatttgttttgctttttcacaaagcatgttagccaactctaaagaagaatgaac |
100 |
Q |
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|||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||| |
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| T |
24897472 |
caacctcatccgggataatccacaccgaacctttttccatcaaacctatttgttttgctttctcacaaataatattagccaactctaaagaagaacgaac |
24897373 |
T |
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| Q |
101 |
aatcaagaataccctattactctttcttttcagcttattaagctctttttcaattatatattttgggtccgaaagagttgataacgaaggaaaagctaaa |
200 |
Q |
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| T |
24897372 |
aatcaagaagaccctattactcttccttttcaacttattaagctcattttcaattgtagattctgcgtctgaaagtgtggataaagaaggaaaagctaaa |
24897273 |
T |
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| Q |
201 |
tggtcatcaatctcagaaccaacaagtcttagagaat |
237 |
Q |
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| T |
24897272 |
tggctttcaatttcagaaccaacaagtttgagagaat |
24897236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 24909565 - 24909339
Alignment:
| Q |
11 |
cgggataatccacgctgaacctttttccatcaaacctatttgttttgctttttcacaaagcatgttagccaactctaaagaagaatgaacaatcaagaat |
110 |
Q |
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| T |
24909565 |
cgggataatccataccgaacctttttccatcaaacctatttgttttgctttctcacaaataatattagccaactctaaagaagaacgaacaatcaagaag |
24909466 |
T |
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| Q |
111 |
accctattactctttcttttcagcttattaagctctttttcaattatatattttgggtccgaaagagttgataacgaaggaaaagctaaatggtcatcaa |
210 |
Q |
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| T |
24909465 |
accctattactcttccttttcaacttattaagctcattttcaattgtagattctgcgtctgaaagtgtggataaagaaggaatagctaaatggctttcaa |
24909366 |
T |
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| Q |
211 |
tctcagaaccaacaagtcttagagaat |
237 |
Q |
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| T |
24909365 |
tttcagaaccagcaagtttaagagaat |
24909339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 24987068 - 24986842
Alignment:
| Q |
11 |
cgggataatccacgctgaacctttttccatcaaacctatttgttttgctttttcacaaagcatgttagccaactctaaagaagaatgaacaatcaagaat |
110 |
Q |
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| T |
24987068 |
cgggataatccacaccgaacctttttccatcaaacctatttgttttgctttctcacaaataatattagccaactctaaagaagaacgaacaatcaagaag |
24986969 |
T |
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| Q |
111 |
accctattactctttcttttcagcttattaagctctttttcaattatatattttgggtccgaaagagttgataacgaaggaaaagctaaatggtcatcaa |
210 |
Q |
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| T |
24986968 |
accctattactcttccttttcaactcattaagctcattttcaattgtagattctgcgtctgaaagtgtggataaagaaggaatagctaaatggctttcaa |
24986869 |
T |
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| Q |
211 |
tctcagaaccaacaagtcttagagaat |
237 |
Q |
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| T |
24986868 |
tttcagaaccagcaagtttaagagaat |
24986842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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