View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_1 (Length: 669)
Name: NF15123_low_1
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 40099122 - 40098806
Alignment:
| Q |
16 |
gttttgactaaagggaacgaaagtgcggagagacatatatgtgcaaattaaggaggaaatcctcgttttcggaaacaaacaaaacaaagtaacgttttca |
115 |
Q |
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| T |
40099122 |
gttttgactaaagggaacgaaagtgcggagagacatatatgtgcaaattaaggaggaaatcctcgttttcggaaacaaacaaaacaaagtaacgttttca |
40099023 |
T |
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| Q |
116 |
tctccgaattcagaccagaccagatacagacacataatttttagtactatttattatccttttcaatttcaagtcaaaaaaccttcaaccctgtttctct |
215 |
Q |
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| T |
40099022 |
tctccgaattcagaccagaccagatacagacacataatttttagtactatttattatccttttcaatttcaagtcaaaaaaccttcaaccctgtttctct |
40098923 |
T |
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| Q |
216 |
gttgaattgagattcaatatcgaatcagaaaataacacatggatcacttacataggaagctacgcgaccacgaagctgctatgtttcaacaggttcctat |
315 |
Q |
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| T |
40098922 |
gttgaattgagattcaatatcgaatcagaaaataacacatggatcacttacataggaagctacgcgaccacgaagctgctatgtttcaacaggttcctat |
40098823 |
T |
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| Q |
316 |
aatctttccatgacatg |
332 |
Q |
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| T |
40098822 |
aatctttccatgacatg |
40098806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 400 - 660
Target Start/End: Complemental strand, 40098738 - 40098478
Alignment:
| Q |
400 |
gatgaaatcatgtcaaaaaagcttgattattgtttatttatttttaataaatttgatattataggttattgaggaagcagggttatctggatgatcaatt |
499 |
Q |
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| T |
40098738 |
gatgaaatcatgtcaaaaaagcttgattattgtttatttatttttaataaatttgatattattggttattgagggagcagggttatctggatgatcaatt |
40098639 |
T |
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| Q |
500 |
caggcagcttcagaaacttcaagacgacactagtcctgatttcgtgattgaggttatgactatgttctttgatgattctgagaaacttctcaacaacatg |
599 |
Q |
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| T |
40098638 |
cagtcagcttcagaaacttcaagacgacactagtcctgatttcgtgattgaggttatgactatgttctttgatgattctgagaaacttctcaacaacatg |
40098539 |
T |
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| Q |
600 |
tcacgtgccctgtaagtattattactattactctctttaatggaattgattttattttctt |
660 |
Q |
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| T |
40098538 |
tcacgtgccctgtaagtattattactattactctctttaatggaattgattttattttctt |
40098478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 39881656 - 39881714
Alignment:
| Q |
254 |
atggatcacttacataggaagctacgcgaccacgaagctgctatgtttcaacaggttcc |
312 |
Q |
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| T |
39881656 |
atggattatttacagaggaagctacgcgaccacaaagctgctatgtttcaacaggttcc |
39881714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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