View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_12 (Length: 288)
Name: NF15123_low_12
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_12 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34876814 - 34877019
Alignment:
| Q |
1 |
aattaaataatcaagttggtctgtttgtccgaatcaccatatttttgttttaattgaccacctttccttaaaccttacgtactgtctccaatcgtggaag |
100 |
Q |
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| T |
34876814 |
aattaaataatcaagttggtctgtttgtccgaatcaccatatttttgttttaattgaccacctttccttaaaccttacttactgtctccaatcgtggaag |
34876913 |
T |
|
| Q |
101 |
taattcaaacattctctcctctcttgtttgtctccctaacattttgttttcgaaaatattttatggatatctgaatccataaagaaaaggatgtgatatg |
200 |
Q |
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||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34876914 |
taattcagacattctctcttttcttgtttgtctccctaacattttgttttcgaaaatattttatggatatctgaatccataaagaaaaggatgtgatatg |
34877013 |
T |
|
| Q |
201 |
ttaatg |
206 |
Q |
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|||||| |
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| T |
34877014 |
ttaatg |
34877019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 34877046 - 34877078
Alignment:
| Q |
204 |
atgaagattaaaagtgtgcaaatatcattgtcg |
236 |
Q |
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| T |
34877046 |
atgaagattaaaactgtgcaaatatcattgtcg |
34877078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 2799927 - 2799881
Alignment:
| Q |
242 |
gagaccttgaggaggagcacacgtccagatctcaagtctataccact |
288 |
Q |
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| T |
2799927 |
gagaccttgaggaggagcacactcccagatctcaagcctataccact |
2799881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 51814559 - 51814515
Alignment:
| Q |
242 |
gagaccttgaggaggagcacacgtccagatctcaagtctatacca |
286 |
Q |
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| T |
51814559 |
gagaccttgaggaggagcacactctcagatctcaagtcaatacca |
51814515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 29785312 - 29785357
Alignment:
| Q |
242 |
gagaccttgaggaggagcacacgtccagatctcaagtctataccac |
287 |
Q |
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|||||||||||||||||||||| |||||||| |||| ||||||||| |
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| T |
29785312 |
gagaccttgaggaggagcacacttccagatcccaagcctataccac |
29785357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 18363761 - 18363715
Alignment:
| Q |
242 |
gagaccttgaggaggagcacacgtccagatctcaagtctataccact |
288 |
Q |
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|||||||||||||||||||||| ||| |||||||| |||||||||| |
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| T |
18363761 |
gagaccttgaggaggagcacactcccaaatctcaagcctataccact |
18363715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 30311371 - 30311325
Alignment:
| Q |
242 |
gagaccttgaggaggagcacacgtccagatctcaagtctataccact |
288 |
Q |
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|||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
30311371 |
gagaccttgaggaggagcacactcccagatcccaagcctataccact |
30311325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 7975482 - 7975437
Alignment:
| Q |
243 |
agaccttgaggaggagcacacgtccagatctcaagtctataccact |
288 |
Q |
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||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
7975482 |
agaccttgaggaggagcacactcccagatcccaagcctataccact |
7975437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 13057 - 13102
Alignment:
| Q |
242 |
gagaccttgaggaggagcacacgtccagatctcaagtctataccac |
287 |
Q |
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|||||||||||||||||||||| |||||||||||| | ||||||| |
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| T |
13057 |
gagaccttgaggaggagcacactcccagatctcaagccaataccac |
13102 |
T |
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