View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15123_low_13 (Length: 270)

Name: NF15123_low_13
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15123_low_13
NF15123_low_13
[»] chr5 (9 HSPs)
chr5 (1-185)||(41430775-41430958)
chr5 (68-119)||(41321957-41322008)
chr5 (50-116)||(41285978-41286044)
chr5 (56-144)||(41331863-41331950)
chr5 (50-119)||(41366067-41366136)
chr5 (68-140)||(31188933-31189004)
chr5 (53-117)||(41359731-41359795)
chr5 (70-140)||(31185415-31185484)
chr5 (68-117)||(41323978-41324027)
[»] chr4 (1 HSPs)
chr4 (68-117)||(17249621-17249670)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 41430958 - 41430775
Alignment:
Q  1 gctctgtaacatatgtatattttttgtagttgcctccaataatctggacagaatgcaatatttgtatcattgtaagtaaatattgtagacaaaacaaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41430958 gctctgtaacatatgtatattttttgtagttgcctccaataatctggacagaatgcaatatttgtatcattgtaagtaaatattgtagacaaaagaaggt 41430859  T
Q  101 ttggcctatcacaaaagttttaagtcttgtgttttcataacctccttatcatctgtgtaaattatttttaaacttcacaacttaa 185  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41430858 ttggcctatcacaaaag-tttaagtcttgtgttttcataacctccttatcatctgtgtaaattatttttaaacttcacaacttaa 41430775  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 41322008 - 41321957
Alignment:
Q  68 cattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaagtt 119  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  41322008 cattgtaactaaatattgtagacaaaagaaggtttggcctatcacaaaagtt 41321957  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 41286044 - 41285978
Alignment:
Q  50 agaatgcaatatttgtatcattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaa 116  Q
    |||||||||||| ||||| ||||||||||| |||||| | ||||| |||||||||||||||||||||    
T  41286044 agaatgcaatatctgtattattgtaagtaagtattgtgggcaaaagaaggtttggcctatcacaaaa 41285978  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 41331950 - 41331863
Alignment:
Q  56 caatatttgtatcattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaagttttaagtcttgtgttttcataacctc 144  Q
    ||||||||||| |||||||| |  ||||||| ||||||| ||||||||||||||||||||| | | | ||| |||||||||||||||||    
T  41331950 caatatttgtagcattgtaactccatattgttgacaaaagaaggtttggcctatcacaaaa-tgtaaggtcatgtgttttcataacctc 41331863  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 41366136 - 41366067
Alignment:
Q  50 agaatgcaatatttgtatcattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaagtt 119  Q
    |||| |||||||  ||| |||||||| |||||||||||||||||| ||| |||||||||||||| |||||    
T  41366136 agaaggcaatatcagtagcattgtaactaaatattgtagacaaaagaagttttggcctatcacagaagtt 41366067  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 31188933 - 31189004
Alignment:
Q  68 cattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaagttttaagtcttgtgttttcataa 140  Q
    |||||||| |||||||||| ||||||| ||||||||| |||||||||||| || | ||| |||||||||||||    
T  31188933 cattgtaactaaatattgtggacaaaagaaggtttggtctatcacaaaag-ttgaggtcatgtgttttcataa 31189004  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 41359795 - 41359731
Alignment:
Q  53 atgcaatatttgtatcattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaag 117  Q
    ||||||||| ||||| ||||||||||| |||||| | ||||| |||||||||||| |||| ||||    
T  41359795 atgcaatatctgtattattgtaagtaagtattgtggccaaaagaaggtttggcctgtcaccaaag 41359731  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 31185415 - 31185484
Alignment:
Q  70 ttgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaagttttaagtcttgtgttttcataa 140  Q
    |||||| |||||||||| ||||||| || |||||| |||||||||||| || | ||| |||||||||||||    
T  31185415 ttgtaactaaatattgtggacaaaagaaagtttggtctatcacaaaag-ttgaggtcatgtgttttcataa 31185484  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 41324027 - 41323978
Alignment:
Q  68 cattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaag 117  Q
    |||||||||| |||||||| | ||||| ||||||||||||||||| ||||    
T  41324027 cattgtaagttaatattgtggccaaaagaaggtttggcctatcactaaag 41323978  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 17249621 - 17249670
Alignment:
Q  68 cattgtaagtaaatattgtagacaaaacaaggtttggcctatcacaaaag 117  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  17249621 cattgtaagtaaatattgtggacaaaagaaggttaggcctatcacaaaag 17249670  T

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