View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_15 (Length: 253)
Name: NF15123_low_15
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2151542 - 2151784
Alignment:
| Q |
1 |
caattaagaaatattacgttttcataatgatcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgt------ctatgttttgaatga |
94 |
Q |
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| T |
2151542 |
caattgagaaatattacgttttcataatggtcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgtctatgttttgaatga |
2151641 |
T |
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| Q |
95 |
accttcttggtggacaatcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattctcttccatttgagagtgtaat |
194 |
Q |
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| T |
2151642 |
accttcttggtggacaatcattgagatccttgaccaaaattctttgtctctcacggtaaatatgtttgacaacaaattctcttccatttgagagtgtaat |
2151741 |
T |
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| Q |
195 |
caaaggttggttattcttgcaaacaacttcaaatcctgggtac |
237 |
Q |
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| T |
2151742 |
caaaggttgcttattcttgcaaacaacttcaaatcctgggtac |
2151784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2146138 - 2146374
Alignment:
| Q |
1 |
caattaagaaatattacgttttcataatgatcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgttttgaatgaaccttc |
100 |
Q |
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| T |
2146138 |
caattgagaaatgttacgttttcataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgttttgaaggaaccttc |
2146237 |
T |
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| Q |
101 |
ttggtggacaatcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaagg |
200 |
Q |
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| T |
2146238 |
ttggtggacaatcattgggatcatccatccatattctttggctctcataggatatatttttgataacatattcttttccatttgagagtgtaatcaaagg |
2146337 |
T |
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| Q |
201 |
ttggttattcttgcaaacaacttcaaatcctgggtac |
237 |
Q |
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| T |
2146338 |
ttgcttatttttgcaaacaacttcaaagcctgggtac |
2146374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 2142058 - 2142249
Alignment:
| Q |
47 |
tgtccaattggaaaggtgaatcatcgtcgatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattctttgtctctc |
146 |
Q |
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| T |
2142058 |
tgtcccattggaaaggtgaatcattgttgaggtctatgttc--aaggaaccgtcttggtgaacaaccattaggatcatccaaccaaattctttgacttgc |
2142155 |
T |
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| Q |
147 |
atgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggt---tattcttgcaaacaacttcaaatcctgggtac |
237 |
Q |
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| T |
2142156 |
atgggaaaattttttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtac |
2142249 |
T |
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