View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_17 (Length: 239)
Name: NF15123_low_17
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_17 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 148778 - 149003
Alignment:
| Q |
1 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacacttcatggaaatgaatgagacctttagaaaatagaaattgaaattccaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
148778 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacgcttcatggaaatgaatgagacctttagaaaattgaaattgaaattccaaag |
148877 |
T |
|
| Q |
101 |
aaagtttgcactagaataccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgcagctaaagctattgttgaagctgcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
148878 |
aaagtttgcactagaataccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgcagctaaagctattgttgaagctgcaaat |
148977 |
T |
|
| Q |
201 |
aaatcatcacaaggaaagttaagact |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
148978 |
aaatcatcacaaggaaagttaagact |
149003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 140169 - 140394
Alignment:
| Q |
1 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacacttcatggaaatgaatgagacctttagaaaatagaaattgaaattccaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
140169 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacactttatggaaatgaatgagacctttagaaaatttaaattcaaattccaaag |
140268 |
T |
|
| Q |
101 |
aaagtttgcactagaataccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgcagctaaagctattgttgaagctgcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
140269 |
aaagtttgcactagaataccctgaagaagatagcattaacccaagtatctttgcatttcaagcatatgatgcaactaaagctattgttgaaactgcaaaa |
140368 |
T |
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| Q |
201 |
aaatcatcacaaggaaagttaagact |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
140369 |
aaatcatcacaaggaaagttaagact |
140394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24897494 - 24897719
Alignment:
| Q |
1 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacacttcatggaaatgaatgagacctttagaaaatagaaattgaaattccaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || | || ||||| | ||||| ||||| ||| |
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| T |
24897494 |
actcttctgttatcttcaacatgcaaggtgttgttggatttagaacacacttcatagaaatgaataaggctttcagaaagtttaaattcctattccgaag |
24897593 |
T |
|
| Q |
101 |
aaagtttgcactagaataccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgcagctaaagctattgttgaagctgcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
24897594 |
aaagtttgcactagaataccctgaagaagatagcgttaacccaagtaactttgcacttcaagcatattatgcagctaaagctattgctgaagctgcaaat |
24897693 |
T |
|
| Q |
201 |
aaatcatcacaaggaaagttaagact |
226 |
Q |
| |
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|||| ||||||||||||||| ||||| |
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| T |
24897694 |
aaattatcacaaggaaagttcagact |
24897719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24987100 - 24987325
Alignment:
| Q |
1 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacacttcatggaaatgaatgagacctttagaaaatagaaattgaaattccaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || | || ||||| | ||||| ||||||||| |
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| T |
24987100 |
actcttctgttatcttcaacatgcaaggtgttgttggatttagaacacacttcatagaaatgaataaggctttcagaaagtttaaattcctattccaaag |
24987199 |
T |
|
| Q |
101 |
aaagtttgcactagaataccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgcagctaaagctattgttgaagctgcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
24987200 |
aaagtttgcactagaataccctgaagaagatagcgttaacccaagtaactttgcacttcaagcatattatgcaactaaagctattgctgaagctgcaaat |
24987299 |
T |
|
| Q |
201 |
aaatcatcacaaggaaagttaagact |
226 |
Q |
| |
|
|||| |||||||| |||||| ||||| |
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| T |
24987300 |
aaattatcacaagtaaagttcagact |
24987325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 24909597 - 24909822
Alignment:
| Q |
1 |
actcttctgttatcttcaacatgcaaggtgttgttggatttaaaacacacttcatggaaatgaatgagacctttagaaaatagaaattgaaattccaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| || || ||||| | ||||| ||||| ||| |
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| T |
24909597 |
actcttctgttatcttcaacatgcaaggtgttgttggatttagaacacacttcatagaaatgaataagggtttcagaaagtttaaattcctattccgaag |
24909696 |
T |
|
| Q |
101 |
aaagtttgcactagaataccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgcagctaaagctattgttgaagctgcaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
24909697 |
aaagtttgcactagaataccctgaagaagatagtgttaacccaagtaacattgcacttcaagcatattatgcaactaaagctattgctgaagctgcaaat |
24909796 |
T |
|
| Q |
201 |
aaatcatcacaaggaaagttaagact |
226 |
Q |
| |
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|||| ||||||||||||||| ||||| |
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| T |
24909797 |
aaattatcacaaggaaagttcagact |
24909822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23230 - 23468
Alignment:
| Q |
1 |
actcttctgttatcttcaacatgc-aaggtgttgttggatttaaaacac-acttcatg-gaaatgaatgagaccttt--agaaaatagaaattgaaatt- |
94 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||||| | |||| |||| | ||||| ||| |
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| T |
23230 |
actcttctgttatcttcaacatgctaaggtgttgttggatttagaacaccacttcataagaaatgaataaaggctttcaagaagtttaaaattcctatta |
23329 |
T |
|
| Q |
95 |
ccaaagaaa-gtttgcactagaa-taccctgaagaagataacattaacccaagtatctttgcacttcaagcatatgatgc-agctaaagct-attgttg- |
189 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||| |||| | |||||||| |||| || |
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|
| T |
23330 |
ccaaagaaaagtttgcactagaactaccctgaagaagatagcgttaacccaagtaactttgcacttcaagcatattatgcaaactaaagctaattgctga |
23429 |
T |
|
| Q |
190 |
aagctgcaaa--taaatcatcacaaggaaagttaagact |
226 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| ||||| |
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|
| T |
23430 |
aagctgcaaaattaaattatcacaagtaaagttcagact |
23468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 33114318 - 33114276
Alignment:
| Q |
184 |
ttgttgaagctgcaaataaatcatcacaaggaaagttaagact |
226 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
33114318 |
ttgttgaagctgcaaataaattatcacaaggaaagttcagact |
33114276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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