View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15123_low_2 (Length: 544)

Name: NF15123_low_2
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15123_low_2
NF15123_low_2
[»] chr4 (6 HSPs)
chr4 (19-310)||(49120646-49120937)
chr4 (19-256)||(18133490-18133727)
chr4 (19-117)||(49104940-49105038)
chr4 (468-536)||(49117951-49118019)
chr4 (321-402)||(49118854-49118934)
chr4 (411-443)||(49118418-49118450)
[»] chr2 (2 HSPs)
chr2 (27-117)||(6955016-6955106)
chr2 (72-117)||(6965185-6965230)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 49120937 - 49120646
Alignment:
Q  19 agatgatgttgctgttggaattggcggtgagggtggaatactgccaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggtc 118  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49120937 agatgatgttgctgttggaattggtggtgagggtggaatactgtcaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggtc 49120838  T
Q  119 ctaataatttcatcttttatgtataccagtagtattaaagtagttatataccatactcctactgcccccacattctatttttataggcatcatttcccct 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49120837 ctaataatttcctcttttatgtataccagtagtattaaagtagttatataccatactcctactgcccccacattctatttttataggcatcatttcccct 49120738  T
Q  219 ttcacgtgaataaaagtgagcagttaatttttgtacccaaaaataaatttcagcagttatttttccttttnnnnnnngtgagtagttaattt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||    
T  49120737 ttcacgtgaataaaagtgagcagttaatttttgtacccaaaaataaattttagcagttatttttccttttaaaaaaagtgagtagttaattt 49120646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 18133727 - 18133490
Alignment:
Q  19 agatgatgttgctgttggaattggcggtgagggtggaatactgccaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggtc 118  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133727 agatgatgttgctgttggaattggtggtgagggtggaatactgtcaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggtc 18133628  T
Q  119 ctaataatttcatcttttatgtataccagtagtattaaagtagttatataccatactcctactgcccccacattctatttttataggcatcatttcccct 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133627 ctaataatttcctcttttatgtataccagtagtattaaagtagttatataccatactcctactgcccccacattctatttttataggcatcatttcccct 18133528  T
Q  219 ttcacgtgaataaaagtgagcagttaatttttgtaccc 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18133527 ttcacgtgaataaaagtgagcagttaatttttgtaccc 18133490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 49105038 - 49104940
Alignment:
Q  19 agatgatgttgctgttggaattggcggtgagggtggaatactgccaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggt 117  Q
    ||||||| ||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  49105038 agatgatattgctgttggagttggaggagagggtggaatactaccaaatggtaccatactcccaaatgttggtggatatcttccaattatagatcaggt 49104940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 49118019 - 49117951
Alignment:
Q  468 ttcatgcattcctgcatatatgatggaatgttataccaacagagtcgagatcacggtgactcatattga 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49118019 ttcatgcattcctgcatatatgatggaatgttataccaacagagtcgagatcacggtgactcatattga 49117951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 321 - 402
Target Start/End: Complemental strand, 49118934 - 49118854
Alignment:
Q  321 cttttgtcgttttcaagtgttgttagaaaaatattttatnnnnnnnntataacttgacttaaatgaaaaactattaggattg 402  Q
    |||||||||||||||||||||| |||||||  |||||||         ||| ||||||||||||||||||||||||||||||    
T  49118934 cttttgtcgttttcaagtgttgctagaaaatcattttataaaaaaaa-atatcttgacttaaatgaaaaactattaggattg 49118854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 443
Target Start/End: Complemental strand, 49118450 - 49118418
Alignment:
Q  411 aaggaggattaacttttttctaaaaatactttt 443  Q
    |||||||||||||||||||||||||||||||||    
T  49118450 aaggaggattaacttttttctaaaaatactttt 49118418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 6955016 - 6955106
Alignment:
Q  27 ttgctgttggaattggcggtgagggtggaatactgccaaatggtaccatactcccaaatgttggtggatatctaccaattatagaacaggt 117  Q
    ||||||||||| | || ||||| |||||||| || ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||    
T  6955016 ttgctgttggagtgggaggtgaaggtggaattctcccaaatggtaccatacttcctaatgttggtggatatcttccaattatagaacaggt 6955106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 6965185 - 6965230
Alignment:
Q  72 ccatactcccaaatgttggtggatatctaccaattatagaacaggt 117  Q
    ||||||| |||||||||||||||||||| ||||| || ||||||||    
T  6965185 ccatacttccaaatgttggtggatatcttccaatcattgaacaggt 6965230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University