View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15123_low_3 (Length: 527)
Name: NF15123_low_3
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 212 - 509
Target Start/End: Complemental strand, 13503997 - 13503700
Alignment:
| Q |
212 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcattgtcttttgtgtaattaacc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13503997 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcacagtcttttgtgtaattaacc |
13503898 |
T |
|
| Q |
312 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503897 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
13503798 |
T |
|
| Q |
412 |
ggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgctgcttctcttggttcaatctttggtgcctctatctt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13503797 |
ggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgctgcttctcttggttcaatctttggtgcctctatctt |
13503700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 13504158 - 13504057
Alignment:
| Q |
53 |
tcaacacatattttcgtaattatagcggttcatgccccgtgtgaaaatcaatggaataacta--acgaccatataactataaggtaattatacattcttg |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13504158 |
tcaacacatattttcgtaattatagcggttcatgtcccgtgtgaaaatcaatggaataactaacacgaccatataactataaggtaattatacattcttg |
13504059 |
T |
|
| Q |
151 |
tc |
152 |
Q |
| |
|
|| |
|
|
| T |
13504058 |
tc |
13504057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 52500988 - 52501048
Alignment:
| Q |
344 |
ttgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcacca |
404 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| || |||||||||| |||||||||||||| |
|
|
| T |
52500988 |
ttgcttttgttgttgtcctcttagctaccatatgctccgttctggcacatgatcatcacca |
52501048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 411
Target Start/End: Complemental strand, 1865727 - 1865632
Alignment:
| Q |
316 |
actaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
411 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||||||||||| ||||| || | ||||||| ||||| |||| | |||||| ||||| ||||| |
|
|
| T |
1865727 |
actaagtacacaatgaagatgaagattgttgcttttgttgttgtcctcttagccgccataagctccgttatggcacgtgatcactaccatcatcat |
1865632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University