View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15123_low_4 (Length: 493)

Name: NF15123_low_4
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15123_low_4
NF15123_low_4
[»] chr4 (3 HSPs)
chr4 (21-346)||(9413858-9414184)
chr4 (347-487)||(52871980-52872120)
chr4 (358-487)||(32089503-32089632)
[»] chr1 (5 HSPs)
chr1 (125-201)||(9994701-9994776)
chr1 (252-298)||(9996658-9996704)
chr1 (252-298)||(10007643-10007689)
chr1 (120-189)||(9977402-9977471)
chr1 (95-163)||(9996487-9996556)
[»] chr5 (3 HSPs)
chr5 (345-378)||(15036896-15036929)
chr5 (345-378)||(15039393-15039426)
chr5 (345-378)||(15041890-15041923)
[»] chr3 (3 HSPs)
chr3 (34-78)||(5670779-5670823)
chr3 (34-78)||(5680272-5680316)
chr3 (34-78)||(5694424-5694468)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 9414184 - 9413858
Alignment:
Q  21 tcagatatgagctaggcctttacaatgaatcttgctgtaagaagaggaggagaaataaagaaaagtggtaatgaaatcaatagatctagccatactactt 120  Q
    ||||||||||| ||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9414184 tcagatatgagttagacctttataatgagtcttgctgcaagaagaggaggagaaataaagaaaagtggtaatgaaatcagtagatctagccatactactt 9414085  T
Q  121 tataaaaaaggtaaccaaaatgtgattaatgaaagaaataatgtgccaaaataggtctcaacttcataaaacgagc-ttcattaaactaaatgcaaaatg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  9414084 tataaaaaaggtaaccaaaatgtgattaatgaaagaaataatgtgccaaaataggtctcaacttcataaaacgaactttcattaaactaaatgtaaaatg 9413985  T
Q  220 tacaaattaaaacacgcaatatattcaaggaaaagttgcacataataggtttttagcaccaaagggactaaatacataagaccatctttaatataaattt 319  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  9413984 tacaaattaaaacacgcaatatattcaaggaaaagttgcacaaaataggtttttagcacaaaacggactaaatacataagaccatctttaatataaattt 9413885  T
Q  320 attgaaagtaagttaaataaaatcaaa 346  Q
    |||||||||||||||||||||||||||    
T  9413884 attgaaagtaagttaaataaaatcaaa 9413858  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 347 - 487
Target Start/End: Complemental strand, 52872120 - 52871980
Alignment:
Q  347 gagttaggatccgttgacaccaaatcacatccgtttannnnnnnaatccaaagacccgtcattgtttgttaaatttacttccgtgggctttcttcccttg 446  Q
    ||||||||||||||||||||||||| |||||||||||       |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52872120 gagttaggatccgttgacaccaaattacatccgtttatttttttaatccaaagatccgtcattgtttgttaaatttacttccgtgggctttcttcccttg 52872021  T
Q  447 attcctccctttccttgttgggaaaactcgtttatgcttcc 487  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  52872020 attcctcccttcccttgttggaaaaactcgtttctgcttcc 52871980  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 358 - 487
Target Start/End: Complemental strand, 32089632 - 32089503
Alignment:
Q  358 cgttgacaccaaatcacatccgtttannnnnnnaatccaaagacccgtcattgtttgttaaatttacttccgtgggctttcttcccttgattcctccctt 457  Q
    |||||| |||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32089632 cgttgataccaaatcacatccgtctatttttttaatccaaagacccgtcattgtttgttaaatttacttctgtgggctttcttcccttgattcctccctt 32089533  T
Q  458 tccttgttgggaaaactcgtttatgcttcc 487  Q
     ||||||||||||||||||||| |||||||    
T  32089532 cccttgttgggaaaactcgtttctgcttcc 32089503  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 9994701 - 9994776
Alignment:
Q  125 aaaaaggtaaccaaaatgtgattaatgaaagaaataatgtgccaaaataggtctcaacttcataaaacgagcttcat 201  Q
    ||||||||| | |||||||||||| ||||| ||||| || || ||||| ||||||||||||||||||| | ||||||    
T  9994701 aaaaaggtaccaaaaatgtgatta-tgaaataaatattgggctaaaatcggtctcaacttcataaaacaaacttcat 9994776  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 9996658 - 9996704
Alignment:
Q  252 aagttgcacataataggtttttagcaccaaagggactaaatacataa 298  Q
    |||||||||||||||||| |||||||| |||  ||||||||||||||    
T  9996658 aagttgcacataataggtatttagcacaaaattgactaaatacataa 9996704  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 10007643 - 10007689
Alignment:
Q  252 aagttgcacataataggtttttagcaccaaagggactaaatacataa 298  Q
    |||||||||||||||||| |||||||| |||  ||||||||||||||    
T  10007643 aagttgcacataataggtatttagcacaaaattgactaaatacataa 10007689  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 9977402 - 9977471
Alignment:
Q  120 ttataaaaaaggtaaccaaaatgtgattaatgaaagaaataatgtgccaaaataggtctcaacttcataa 189  Q
    ||||| |||||||| | ||| |||||||||| |||| ||||||| || ||||| |||| |||||||||||    
T  9977402 ttatagaaaaggtaccaaaactgtgattaattaaaggaataatgagctaaaatcggtcacaacttcataa 9977471  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 9996487 - 9996556
Alignment:
Q  95 aatcaatagatctagccat-actactttataaaaaaggtaaccaaaatgtgattaatgaaagaaataatg 163  Q
    ||||||||||||||||||| |  || ||||| ||||| || | ||||||||||||||||||| |||||||    
T  9996487 aatcaatagatctagccatgaagacgttatagaaaagctaccaaaaatgtgattaatgaaaggaataatg 9996556  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 15036896 - 15036929
Alignment:
Q  345 aagagttaggatccgttgacaccaaatcacatcc 378  Q
    |||||||||||||||||||||||||||| |||||    
T  15036896 aagagttaggatccgttgacaccaaatctcatcc 15036929  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 15039393 - 15039426
Alignment:
Q  345 aagagttaggatccgttgacaccaaatcacatcc 378  Q
    |||||||||||||||||||||||||||| |||||    
T  15039393 aagagttaggatccgttgacaccaaatctcatcc 15039426  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 15041890 - 15041923
Alignment:
Q  345 aagagttaggatccgttgacaccaaatcacatcc 378  Q
    |||||||||||||||||||||||||||| |||||    
T  15041890 aagagttaggatccgttgacaccaaatctcatcc 15041923  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5670779 - 5670823
Alignment:
Q  34 aggcctttacaatgaatcttgctgtaagaagaggaggagaaataa 78  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||    
T  5670779 aggcctttacaatgattattgttgcaagaagaggaggagaaataa 5670823  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5680272 - 5680316
Alignment:
Q  34 aggcctttacaatgaatcttgctgtaagaagaggaggagaaataa 78  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||    
T  5680272 aggcctttacaatgattattgttgcaagaagaggaggagaaataa 5680316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5694424 - 5694468
Alignment:
Q  34 aggcctttacaatgaatcttgctgtaagaagaggaggagaaataa 78  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||    
T  5694424 aggcctttacaatgattattgttgcaagaagaggaggagaaataa 5694468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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