View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_5 (Length: 465)
Name: NF15123_low_5
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 5 - 445
Target Start/End: Complemental strand, 25745629 - 25745189
Alignment:
| Q |
5 |
aatttcttgcattgttttaaagagcatactgcggcagtcaaagctcttgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745629 |
aatttcttgcattgttttaaagagcatactgcggcagtcaaagctctcgattggtgcccttatgattcagatgtgcttgcttctggaggcggaacagatg |
25745530 |
T |
|
| Q |
105 |
atagatgtattaagttgtggaatgtacaaagaggaactaacatttgcagcatagataccaaagctcaggtttgtggattacagtggaatagacattacaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25745529 |
atagatgtattaagttgtggaatgtacaaagaggaaccaacatttgcagcatagataccaaagctcaggtttgtggattacaatggaatagacattacaa |
25745430 |
T |
|
| Q |
205 |
agagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccct |
304 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25745429 |
agagatattaagtggtcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccct |
25745330 |
T |
|
| Q |
305 |
catacttcgagagtccttcatctttctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgtg |
404 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25745329 |
catacttctagagtcctccatctttctcaggtatgcttcaagtcatcattacttaaaccagtatagtggtaaatcgtgagacgattaatcgtccaatgtg |
25745230 |
T |
|
| Q |
405 |
aatttttaaagcatgtaataatgtgagtacagtcattcatt |
445 |
Q |
| |
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|||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
25745229 |
aatttttatagcatgtaagaatgcgagtacagtcattcatt |
25745189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 207 - 445
Target Start/End: Original strand, 4348615 - 4348856
Alignment:
| Q |
207 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccc |
303 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
4348714 |
T |
|
| Q |
304 |
tcatacttcgagagtccttcatctttctcaggtatgcttcaagtcattattacttaaaccagtatagtggtaaatcgagagacgattaatcgtccaatgt |
403 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4348715 |
ccatacttctagagtcctccatctttctcaggtatgcttcaagtcataattacttaaaccagtatagtggtaaatcgagagacgattaatcatccaatgt |
4348814 |
T |
|
| Q |
404 |
gaatttttaaagcatgtaataatgtgagtacagtcattcatt |
445 |
Q |
| |
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| T |
4348815 |
gaatttttaaagcatgtaataatgtgagtacaatcattcatt |
4348856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 170 - 342
Target Start/End: Complemental strand, 18928709 - 18928523
Alignment:
| Q |
170 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaat |
269 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| | |||||||||| |||| |||| |||||||||||||||||||||| |
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| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaat |
18928610 |
T |
|
| Q |
270 |
at-----------ccatctatgactaaagttggaggcttggaccctcatact---tcgagagtccttcatctttctcaggtatgctt |
342 |
Q |
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|| |||||||||| ||| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
18928609 |
atgccaatatccatcatctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctcaggtatgctt |
18928523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 36841081 - 36840973
Alignment:
| Q |
168 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggca |
267 |
Q |
| |
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||||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |
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| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaacattaccaactgtgtttgtggca |
36840982 |
T |
|
| Q |
268 |
atatccatc |
276 |
Q |
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||||||||| |
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| T |
36840981 |
atatccatc |
36840973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 18929040 - 18929000
Alignment:
| Q |
55 |
ttggtgcccttatgattcagatgtgcttgcttctggaggcg |
95 |
Q |
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|||||||||||||| ||||| ||||||||||||||| |||| |
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| T |
18929040 |
ttggtgcccttatggttcagctgtgcttgcttctgggggcg |
18929000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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