View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_6 (Length: 375)
Name: NF15123_low_6
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_6 |
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| [»] scaffold0365 (1 HSPs) |
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| [»] scaffold0400 (1 HSPs) |
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Alignment Details
Target: scaffold0365 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 2840 - 2492
Alignment:
| Q |
18 |
ccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttccgggccaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2840 |
ccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttcccggccaaac |
2741 |
T |
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| Q |
118 |
agcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatcagccatagtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2740 |
agcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatcagccatagtc |
2641 |
T |
|
| Q |
218 |
atcataacaaaaaccgcgacaaccctcctcgaaagcttcacatcttcacctgtacgaatatgcttcacttttatcccatcagcaggaacaagaccttgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2640 |
atcataacaaaaaccgcgacaaccctcctcgaaagcttcacatcttcacctgtacgaatatgcttcacttttatcccatcagcaggaacaagaccttgca |
2541 |
T |
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| Q |
318 |
atttcttcctccaactttcatccttattaaatatccccttctcctttgc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2540 |
atttcttcctccaactttcatccttattaaatatccccttctcctttgc |
2492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 2196 - 1965
Alignment:
| Q |
18 |
ccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttccgggccaaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2196 |
ccaagaatatctcttcctctctcagaatcaaattgtaaacagctcccatcctcgaaatagaattcaaccacaaacccggcttaccatttcccggccaaac |
2097 |
T |
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| Q |
118 |
agcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatcagccatagtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2096 |
agcaccaaaattgttccctttaaactcaagcctaccatcaaagttctcaaacaacatatcttgaaaaccaaaaagctgatcacaaaaatcagccatagtc |
1997 |
T |
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| Q |
218 |
atcataacaaaaaccgcgacaaccctcctcga |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1996 |
atcataacaaaaaccgcgacaaccctcctcga |
1965 |
T |
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