View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15123_low_7 (Length: 343)

Name: NF15123_low_7
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15123_low_7
NF15123_low_7
[»] chr2 (12 HSPs)
chr2 (87-331)||(19966370-19966614)
chr2 (136-201)||(3436405-3436470)
chr2 (135-201)||(27330572-27330638)
chr2 (135-201)||(32493541-32493607)
chr2 (132-201)||(5997860-5997929)
chr2 (132-201)||(14660688-14660757)
chr2 (135-201)||(6201419-6201485)
chr2 (135-201)||(39952129-39952195)
chr2 (135-201)||(41670082-41670148)
chr2 (144-201)||(7634767-7634824)
chr2 (168-201)||(9621055-9621088)
chr2 (136-201)||(21647093-21647158)
[»] chr5 (12 HSPs)
chr5 (135-200)||(7861402-7861467)
chr5 (102-201)||(13146123-13146224)
chr5 (132-201)||(42522122-42522191)
chr5 (141-201)||(36977420-36977480)
chr5 (135-201)||(394382-394448)
chr5 (135-201)||(9771859-9771925)
chr5 (135-201)||(15834876-15834942)
chr5 (133-195)||(26244508-26244570)
chr5 (158-199)||(10378831-10378872)
chr5 (141-201)||(35286021-35286081)
chr5 (135-201)||(865606-865672)
chr5 (135-201)||(5841321-5841387)
[»] chr4 (7 HSPs)
chr4 (135-201)||(35321565-35321631)
chr4 (132-201)||(51717733-51717802)
chr4 (141-201)||(25142267-25142327)
chr4 (135-201)||(24970054-24970120)
chr4 (135-201)||(50679826-50679892)
chr4 (132-201)||(24234884-24234953)
chr4 (141-201)||(17608833-17608893)
[»] chr8 (9 HSPs)
chr8 (136-201)||(32821616-32821681)
chr8 (141-201)||(5967350-5967410)
chr8 (135-201)||(12177854-12177920)
chr8 (135-201)||(12422282-12422348)
chr8 (135-201)||(21511661-21511727)
chr8 (141-201)||(41636423-41636484)
chr8 (135-201)||(33561996-33562062)
chr8 (144-201)||(45364230-45364287)
chr8 (158-201)||(2179232-2179275)
[»] chr7 (17 HSPs)
chr7 (102-201)||(12407958-12408059)
chr7 (132-201)||(28606121-28606190)
chr7 (135-201)||(12392128-12392194)
chr7 (135-201)||(13954318-13954385)
chr7 (97-201)||(37597243-37597349)
chr7 (140-201)||(37668613-37668674)
chr7 (102-201)||(28606749-28606849)
chr7 (158-201)||(7635918-7635961)
chr7 (106-201)||(13953664-13953762)
chr7 (135-201)||(45234601-45234667)
chr7 (149-201)||(5277728-5277780)
chr7 (141-201)||(21698669-21698729)
chr7 (149-201)||(28919067-28919119)
chr7 (132-183)||(42834700-42834751)
chr7 (159-201)||(43094714-43094756)
chr7 (136-201)||(25317994-25318059)
chr7 (141-201)||(9157791-9157851)
[»] chr3 (12 HSPs)
chr3 (135-201)||(12113322-12113388)
chr3 (133-201)||(24475642-24475710)
chr3 (135-201)||(30847055-30847121)
chr3 (141-201)||(19680702-19680762)
chr3 (158-201)||(46552799-46552842)
chr3 (113-199)||(21696901-21696987)
chr3 (135-201)||(39993143-39993209)
chr3 (158-202)||(21224037-21224081)
chr3 (135-201)||(30433930-30433996)
chr3 (135-201)||(47257584-47257649)
chr3 (141-201)||(775665-775725)
chr3 (131-195)||(10760247-10760310)
[»] chr1 (14 HSPs)
chr1 (133-201)||(46284114-46284182)
chr1 (135-201)||(41812002-41812068)
chr1 (135-201)||(51161804-51161870)
chr1 (102-201)||(10891483-10891580)
chr1 (141-201)||(36700101-36700161)
chr1 (141-201)||(36716205-36716265)
chr1 (135-201)||(12628742-12628808)
chr1 (102-201)||(12880264-12880365)
chr1 (135-201)||(15802074-15802140)
chr1 (136-201)||(52042683-52042748)
chr1 (135-196)||(11830745-11830806)
chr1 (132-201)||(29152794-29152863)
chr1 (141-197)||(13573252-13573308)
chr1 (141-201)||(43413350-43413410)
[»] chr6 (8 HSPs)
chr6 (135-198)||(30792972-30793035)
chr6 (132-201)||(32804088-32804156)
chr6 (102-201)||(7793272-7793372)
chr6 (135-201)||(12650088-12650154)
chr6 (132-201)||(12158971-12159040)
chr6 (157-201)||(21955638-21955682)
chr6 (142-197)||(15584285-15584340)
chr6 (135-201)||(17186752-17186818)
[»] scaffold0027 (1 HSPs)
scaffold0027 (102-201)||(116629-116728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (158-201)||(42235-42278)
[»] scaffold1505 (1 HSPs)
scaffold1505 (135-201)||(868-934)
[»] scaffold0001 (1 HSPs)
scaffold0001 (135-183)||(183774-183822)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 87 - 331
Target Start/End: Original strand, 19966370 - 19966614
Alignment:
Q  87 atactgtttcatatgtttgctataacttttttaacaaagt--tcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcat 184  Q
    ||||| |||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  19966370 atactatttcatatttttgctataacttttttaacaaagaagtttttaaagaaagtttcaaatgaaaa-ctcttttgaatagtttattttaaaatatcat 19966468  T
Q  185 tctaaatatttcatcatcgtgtaannnnnnnnnggataataaaatttnnnnnnntctctatcccttcgatatgatgaacaaagtcagtatctggtaaaaa 284  Q
    |||||||||||||||||| |||||         ||||||||||||||       |||||||||||||| |||||||||||||||||||||||||||||||    
T  19966469 tctaaatatttcatcatcttgtaatttttttt-ggataataaaatttaaaaaaatctctatcccttcggtatgatgaacaaagtcagtatctggtaaaaa 19966567  T
Q  285 agaaaatgttgttcctttatgtcttgcagatattggtagataatatt 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19966568 agaaaatgttgttcctttatgtcttgcagatattggtagataatatt 19966614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 3436405 - 3436470
Alignment:
Q  136 aaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||| ||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||    
T  3436405 aaagcttcaaatgaaaaattcatttgaatagtttatcttaaaatgtcattctaagtatttcatcat 3436470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 27330638 - 27330572
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| ||||| |  ||||||||| |||||||||||||||||||||| ||||| |||||    
T  27330638 gaaagtttcaaattaaaaatttgtttgaatagcttattttaaaatgtcattctaagtattttatcat 27330572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 32493541 - 32493607
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| |||||| |||||| |  |||||||||||||| ||||||||||||||||| |||||||||||    
T  32493541 gaaagcttcaaaagaaaaatttgtttgaatagtttatcttaaaatgtcattctaagtatttcatcat 32493607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 5997860 - 5997929
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||| ||||||||||||||  | |||||||||  ||| ||||||||||||||||| |||||||||||    
T  5997860 aaagaaattttcaaatgaaaaatccgtttgaataggatatcttaaaatgtcattctaagtatttcatcat 5997929  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 14660757 - 14660688
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||| |||||||||||||    |||||||||||||| ||||||||||||||||| ||||| |||||    
T  14660757 aaagaaagcttcaaatgaaaaatcggtttgaatagtttatcttaaaatgtcattctaagtattttatcat 14660688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 6201485 - 6201419
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| |||||||||||||  | |||||||||||||| ||||||| ||||| ||| |||||||||||    
T  6201485 gaaagcttcaaatgaaaaatccgtttgaatagtttatcttaaaatatcattataagtatttcatcat 6201419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 39952129 - 39952195
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||| ||||| |  |||||||| ||||| ||||||||||||||||| |||||||||||    
T  39952129 gaaagcttcaaataaaaaatttatttgaataatttatcttaaaatgtcattctaagtatttcatcat 39952195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 41670082 - 41670148
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||| |||||||||||||  |  ||||||||| |||| ||||||||||||||||| |||||||||||    
T  41670082 gaaattttcaaatgaaaattttgtttgaatagcttatattaaaatgtcattctaagtatttcatcat 41670148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 7634824 - 7634767
Alignment:
Q  144 aaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||| || ||||||||| |||  ||||||||||||||||| |||||||||||    
T  7634824 aaatgaaaaattcgtttgaatagcttaacttaaaatgtcattctaagtatttcatcat 7634767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 9621088 - 9621055
Alignment:
Q  168 ttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||| |||||||||||||||||||||||||||||    
T  9621088 ttatcttaaaatgtcattctaaatatttcatcat 9621055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 21647158 - 21647093
Alignment:
Q  136 aaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||| |||||    ||||||||  |||| |||||||||||||||| ||||||||||||    
T  21647158 aaagtttcaaataaaaaatcggtttgaataacttatcttaaaatgtcattctagatatttcatcat 21647093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 7861467 - 7861402
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatca 200  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||    
T  7861467 gaaagtttcaaatgaaaaattcatttgaatagtttatcttaaaatgtcattctaagtatttcatca 7861402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 13146123 - 13146224
Alignment:
Q  102 tttgctataacttttttaacaaagt--tcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatc 199  Q
    |||| ||||| |||||||||||||   | || |||||||| ||||||| |||||  | |||||||||||||| |||||||||||||||||||||||||||    
T  13146123 tttgttataatttttttaacaaagaaattttcaaagaaagcttcaaataaaaaatccgtttgaatagtttatcttaaaatgtcattctaaatatttcatc 13146222  T
Q  200 at 201  Q
    ||    
T  13146223 at 13146224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 42522122 - 42522191
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||  |||||||||||| || ||||||||| |||| ||||||||||||||||| |||||||||||    
T  42522122 aaagaaagcatcaaatgaaaaattcgtttgaatagcttatcttaaaatgtcattctaagtatttcatcat 42522191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 36977420 - 36977480
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||    |||||||||||||||||||||||||||| ||| |||||||||||    
T  36977420 ttcaaatgaaaaatatgtttgaatagtttattttaaaatgtcattttaagtatttcatcat 36977480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 394448 - 394382
Alignment:
Q  135 gaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||||||||| ||| ||||||||| |||| ||||||||||||||||| |||||||||||    
T  394448 gaaagcttcaaatgaaaaa-tctgtttgaatagcttatcttaaaatgtcattctaagtatttcatcat 394382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 9771925 - 9771859
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||||||||  | |||||||||||||| ||||||| | ||| ||| |||||||||||    
T  9771925 gaaagtttcaaatgaaaaatccgtttgaatagtttatcttaaaatcttattataagtatttcatcat 9771859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 15834942 - 15834876
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||| ||||| |  |||||||||||||| |||||||||||||||| |||||| |||||    
T  15834942 gaaagcttcaaataaaaaattggtttgaatagtttatcttaaaatgtcattctagatattttatcat 15834876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 26244570 - 26244508
Alignment:
Q  133 aagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatattt 195  Q
    ||||||||||||||| ||||| || |||||||||||||| | ||||||||||| ||| |||||    
T  26244570 aagaaagtttcaaataaaaaattcgtttgaatagtttatctgaaaatgtcattataagtattt 26244508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 10378872 - 10378831
Alignment:
Q  158 tttgaatagtttattttaaaatgtcattctaaatatttcatc 199  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  10378872 tttgaatagtttatcttaaaatgtcattctaagtatttcatc 10378831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 35286021 - 35286081
Alignment:
Q  141 ttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| ||| |||||||||||| | ||||||| |||||||||||||||||||||    
T  35286021 ttcaaatgaaaaa-tctgtttgaatagtttctcttaaaatatcattctaaatatttcatcat 35286081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 865606 - 865672
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttg-aatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| ||| ||| |||| ||||| ||||||||||||||||| ||||| |||||    
T  865606 gaaagtttcaaatgaaaaa-tctcttggaataatttatcttaaaatgtcattctaagtattttatcat 865672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 5841321 - 5841387
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| |||||||||||||    |||||||||||||| ||| ||| ||||||||| |||||||||||    
T  5841321 gaaagcttcaaatgaaaaatatgtttgaatagtttatcttagaatatcattctaagtatttcatcat 5841387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 35321631 - 35321565
Alignment:
Q  135 gaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  35321631 gaaagtttcaaatgaaaaa-tctgtttgaatagtttatattaaaatgtcattctaaatatttcatcat 35321565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 51717802 - 51717733
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||||||  | ||||||||  |||| ||||||||||||||||| |||||||||||    
T  51717802 aaagaaagtttcaaatgaaaaatccatttgaatatcttatcttaaaatgtcattctaagtatttcatcat 51717733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 25142327 - 25142267
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| || ||||||||  |||||||||||||||||||||| |||||||||||    
T  25142327 ttcaaatgaaaaattcgtttgaataacttattttaaaatgtcattctaagtatttcatcat 25142267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 24970120 - 24970054
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| |  ||||||||| |||  ||||||||||||||||| |||||||||||    
T  24970120 gaaagtttcaaatgaaaaatttgtttgaatagcttaacttaaaatgtcattctaagtatttcatcat 24970054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 50679826 - 50679892
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||||||||| |  |||||||||||||| ||||||| ||||||||| |||||||||||    
T  50679826 gaaagcttcaaatgaaaaatttgtttgaatagtttatcttaaaatatcattctaagtatttcatcat 50679892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 24234953 - 24234884
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||| |||||||||||||| || ||||||||  |||| ||||||||||||| ||| |||||||||||    
T  24234953 aaagaaattttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcat 24234884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 17608893 - 17608833
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| |  |||||| |||||||||||||||| |||||||||||||| |||||    
T  17608893 ttcaaatgaaaaatttgtttgaacagtttattttaaaatgacattctaaatattttatcat 17608833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 32821616 - 32821681
Alignment:
Q  136 aaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||| |||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||||    
T  32821616 aaagcttcaaatgaaaaatccgtttgaatagtttattttaaaatgtcattctaagtatttcatcat 32821681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 5967350 - 5967410
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||| |||| ||  ||||||||||||| |||||||||||||||||||||||||||||    
T  5967350 ttcaaatggaaaattcgattgaatagtttatcttaaaatgtcattctaaatatttcatcat 5967410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12177854 - 12177920
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| || ||||||||  |||| ||||||||||||| ||| |||||||||||    
T  12177854 gaaagtttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcat 12177920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12422282 - 12422348
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| || ||||||||  |||| ||||||||||||| ||| |||||||||||    
T  12422282 gaaagtttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaagtatttcatcat 12422348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 21511727 - 21511661
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||||||||  || ||||||||| |||| ||||||||||||||||| |||||||||||    
T  21511727 gaaagcttcaaatgaaaagttcgtttgaatagattatcttaaaatgtcattctaagtatttcatcat 21511661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 41636423 - 41636484
Alignment:
Q  141 ttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||| || |||||||||||    
T  41636423 ttcaaatgaaaaaatctgtttgaatagtttatcttaaaatgtcattcaaagtatttcatcat 41636484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 33562062 - 33561996
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| || ||||||||  |||| ||||||||||||| ||| ||||| |||||    
T  33562062 gaaagtttcaaatgaaaaattcgtttgaatatcttatcttaaaatgtcattataagtattttatcat 33561996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 45364230 - 45364287
Alignment:
Q  144 aaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||| || |||||||||||||  ||||||||||||| ||| |||||||||||    
T  45364230 aaatgaaaaattcgtttgaatagtttaacttaaaatgtcattttaagtatttcatcat 45364287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 2179232 - 2179275
Alignment:
Q  158 tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||  |||| |||||||||||||||||||||||||||||    
T  2179232 tttgaataacttatcttaaaatgtcattctaaatatttcatcat 2179275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 12407958 - 12408059
Alignment:
Q  102 tttgctataacttttttaacaaagt--tcttaaaagaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcat 198  Q
    |||||||||| |||||||||||||   | || || ||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||    
T  12407958 tttgctataatttttttaacaaagaaattttcaaggaaagcttcaaatgaaaaa-tctatttgaatagtttatcttaaaatgtcattctaagtatttcat 12408056  T
Q  199 cat 201  Q
    |||    
T  12408057 cat 12408059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 28606121 - 28606190
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||| ||||||||||||| |  |||||||||||||| ||||||||| ||||||| |||||||||||    
T  28606121 aaagaaagcttcaaatgaaaaatttgtttgaatagtttatcttaaaatgtgattctaagtatttcatcat 28606190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12392128 - 12392194
Alignment:
Q  135 gaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  12392128 gaaagcttcaaatgaaaaa-tctatttgaatagtttatcttaaaatgtcattctaagtatttcatcat 12392194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 13954318 - 13954385
Alignment:
Q  135 gaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||| ||||||||| ||| |||||||||||||| ||||||||| ||||||| |||||||||||    
T  13954318 gaaagtttcgaatgaaaaaatctgtttgaatagtttatcttaaaatgtaattctaagtatttcatcat 13954385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 37597243 - 37597349
Alignment:
Q  97 atatgtttgctataacttttttaacaaagt--tcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatt 194  Q
    ||||||||| |||||  ||||||||||||   | || || ||||| ||||||||||||| || ||||||||| |||  ||||||||||||||||| ||||    
T  37597243 atatgtttgttataatatttttaacaaagaagttttcaaggaaagcttcaaatgaaaaattcgtttgaatagcttaacttaaaatgtcattctaagtatt 37597342  T
Q  195 tcatcat 201  Q
    |||||||    
T  37597343 tcatcat 37597349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 37668674 - 37668613
Alignment:
Q  140 tttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||  || |||||||||||||| | ||||||||||||||||||||| |||||    
T  37668674 tttcaaatgaaaatttcgtttgaatagtttatctaaaaatgtcattctaaatattttatcat 37668613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 28606849 - 28606749
Alignment:
Q  102 tttgctataacttttttaacaaagt-tcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatca 200  Q
    |||| ||||| |||||||||||||  | || || ||||| |||||||||||||  | ||| |||||||||| ||||||||||||||||| ||||| ||||    
T  28606849 tttgttataatttttttaacaaagaattttcaaggaaagcttcaaatgaaaaatccatttcaatagtttatcttaaaatgtcattctaagtattttatca 28606750  T
Q  201 t 201  Q
    |    
T  28606749 t 28606749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 7635961 - 7635918
Alignment:
Q  158 tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||| |||||||||||| |||||||||||||||||||||    
T  7635961 tttgaatagcttattttaaaatatcattctaaatatttcatcat 7635918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 13953664 - 13953762
Alignment:
Q  106 ctataacttttttaacaaagttctt--aaaagaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||| ||||||||||||| | ||  ||| ||||||||  ||||||||| | | |||||||||||||| ||||||||| ||||||| |||||||||||    
T  13953664 ctataatttttttaacaaagatttttcaaaggaaagttttgaatgaaaaaatttgtttgaatagtttatattaaaatgtaattctaagtatttcatcat 13953762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 45234667 - 45234601
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||| ||||||||| |  ||| |||||||||| ||||||||||||||||| |||||||||||    
T  45234667 gaaagcttcgaatgaaaaatttgtttcaatagtttatcttaaaatgtcattctaagtatttcatcat 45234601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 5277728 - 5277780
Alignment:
Q  149 aaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| || ||||||||| |||| ||||||||||||||||| |||||||||||    
T  5277728 aaaaattcatttgaatagcttatcttaaaatgtcattctaactatttcatcat 5277780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 21698669 - 21698729
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||| || ||||||||| |||||||||||||||||||||  || ||||||||    
T  21698669 ttcaattgaaaaattcgtttgaatagattattttaaaatgtcattctatgtaattcatcat 21698729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 28919119 - 28919067
Alignment:
Q  149 aaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| || ||||||||  |||| |||||||||||||||||||||||||||||    
T  28919119 aaaaattcgtttgaataacttatcttaaaatgtcattctaaatatttcatcat 28919067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 42834751 - 42834700
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtca 183  Q
    |||||||| ||||||||||||| || |||||||| ||||| |||||||||||    
T  42834751 aaagaaagcttcaaatgaaaaattcgtttgaataatttatcttaaaatgtca 42834700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 43094756 - 43094714
Alignment:
Q  159 ttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| ||||||||||||||| | |||||||||||    
T  43094756 ttgaatagtttatcttaaaatgtcattcttagtatttcatcat 43094714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 25317994 - 25318059
Alignment:
Q  136 aaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| || ||||||||| || |||||||||||||| ||||||||| ||| ||| |||| ||||||    
T  25317994 aaagtctcgaatgaaaaaatcgtttgaatagtttatcttaaaatgtaattttaagtattccatcat 25318059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 9157851 - 9157791
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||| ||||| |  |||||||| ||||| |||||| |||||||||| |||||||||||    
T  9157851 ttcaaataaaaaatttgtttgaataatttatcttaaaaggtcattctaagtatttcatcat 9157791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12113322 - 12113388
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| |||||||||||||  | |||||||||||||| ||||||||||||||||| |||||||||||    
T  12113322 gaaagattcaaatgaaaaatccatttgaatagtttatcttaaaatgtcattctaagtatttcatcat 12113388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 24475710 - 24475642
Alignment:
Q  133 aagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||| | ||||||||||| || ||||||||| |||| |||||| ||||||||||||||||||||||    
T  24475710 aagaaagctacaaatgaaaaattcgtttgaatagcttatcttaaaacgtcattctaaatatttcatcat 24475642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 30847121 - 30847055
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| |  ||||||||  |||| ||||||||||||||||| |||||||||||    
T  30847121 gaaagtttcaaatgaaaaatttgtttgaataacttatcttaaaatgtcattctaagtatttcatcat 30847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 19680702 - 19680762
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| |  |||||||||||||| ||||||||||||| |||||||||| ||||    
T  19680702 ttcaaatgaaaaatttgtttgaatagtttatcttaaaatgtcattttaaatatttcgtcat 19680762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 46552842 - 46552799
Alignment:
Q  158 tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  46552842 tttgaatagtttatcttaaaatgtcattctaagtatttcatcat 46552799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 21696987 - 21696901
Alignment:
Q  113 ttttttaacaaagttcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatc 199  Q
    |||||||||||  || || || |||||  ||||||  |||| || ||||||||| |||||||||||||||||||||| |||||||||    
T  21696987 ttttttaacaattttttttaaggaaagcgtcaaatagaaaattcctttgaatagcttattttaaaatgtcattctaagtatttcatc 21696901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 39993143 - 39993209
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||||||||| |  ||| ||||| |||| ||||||||||||||||| |||||||||||    
T  39993143 gaaagcttcaaatgaaaaattggttttaatagcttatcttaaaatgtcattctaagtatttcatcat 39993209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 21224037 - 21224081
Alignment:
Q  158 tttgaatagtttattttaaaatgtcattctaaatatttcatcatc 202  Q
    |||||||||||||| ||||||| ||||||||| ||||||||||||    
T  21224037 tttgaatagtttatcttaaaatatcattctaagtatttcatcatc 21224081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 30433930 - 30433996
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||| ||||| |  ||||||||| |||| ||||||||||||| || ||||||||||||    
T  30433930 gaaagcttcaaataaaaaattgatttgaatagcttatcttaaaatgtcattttagatatttcatcat 30433996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 47257649 - 47257584
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| | ||| || |||||||| ||||||| | ||||||| |||||||||||    
T  47257649 gaaagtttcaaatgaaaaattgttt-gattagtttatcttaaaatataattctaagtatttcatcat 47257584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 775665 - 775725
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||| |  ||||||||| || | ||||||| | |||||||||||||||||||    
T  775665 ttcaaatgaaaaattggtttgaatagcttctcttaaaatattattctaaatatttcatcat 775725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 10760310 - 10760247
Alignment:
Q  131 aaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatattt 195  Q
    |||||||| ||||||||||| || |  ||||||| |||||| |||||||||| ||||||||||||    
T  10760310 aaaagaaa-tttcaaatgaacaattggtttgaattgtttatcttaaaatgtcgttctaaatattt 10760247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 46284114 - 46284182
Alignment:
Q  133 aagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||| |||||||||||||| |  ||| |||| ||||||||||||||| |||||||||||||||||||    
T  46284114 aagaaaatttcaaatgaaaaatttgtttaaataatttattttaaaatgttattctaaatatttcatcat 46284182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 41812002 - 41812068
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||||||||  | ||||||||  |||| ||||||||||||||||| |||||||||||    
T  41812002 gaaagtttcaaatgaaaaatccatttgaataacttatcttaaaatgtcattctaagtatttcatcat 41812068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 51161804 - 51161870
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||||||||    ||||||||||| || ||||||||||||||||| |||||||||||    
T  51161804 gaaagtttcaaatgaaaaatcagtttgaatagttgatcttaaaatgtcattctaagtatttcatcat 51161870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 10891580 - 10891483
Alignment:
Q  102 tttgctataacttttttaacaaagttcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||| ||||| |||||||||||| ||  | || ||||| |||||||||||||  | || ||| ||||||| ||||||||||||||||| |||||||||||    
T  10891580 tttgttataatttttttaacaaattt--tcaaggaaagcttcaaatgaaaaatccgttagaaaagtttatcttaaaatgtcattctaagtatttcatcat 10891483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 36700161 - 36700101
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||  | ||| |||||||||| ||||||||||||||||| |||||||||||    
T  36700161 ttcaaatgaaaaatccgtttaaatagtttatcttaaaatgtcattctaagtatttcatcat 36700101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 36716265 - 36716205
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||  | ||| |||||||||| ||||||||||||||||| |||||||||||    
T  36716265 ttcaaatgaaaaatccgtttaaatagtttatcttaaaatgtcattctaagtatttcatcat 36716205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 12628808 - 12628742
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||| |||||||||| |  |||||||||||||| ||||||||| ||| ||| |||||||||||    
T  12628808 gaaagttttaaatgaaaaatttgtttgaatagtttatcttaaaatgtaattttaagtatttcatcat 12628742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 12880264 - 12880365
Alignment:
Q  102 tttgctataacttttttaacaaagt--tcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatc 199  Q
    |||||||||| |||||||||||||   | || || ||||||||||||||||||| |  |||||||| ||||| ||||||||  ||||||| ||| |||||    
T  12880264 tttgctataatttttttaacaaagaaatttttaaggaaagtttcaaatgaaaaatttgtttgaataatttatcttaaaatgcaattctaagtatctcatc 12880363  T
Q  200 at 201  Q
    ||    
T  12880364 at 12880365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 15802140 - 15802074
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| |||||| ||||||  | ||||||||| |||| ||||||||||||||||| |||||||||||    
T  15802140 gaaagcttcaaacgaaaaatccgtttgaatagcttatcttaaaatgtcattctaagtatttcatcat 15802074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 52042683 - 52042748
Alignment:
Q  136 aaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||| ||||| || ||||||||  |||| |||||||||||||||||  ||||||||||    
T  52042683 aaagtttcaaataaaaaattcatttgaataacttatcttaaaatgtcattctaagcatttcatcat 52042748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 11830745 - 11830806
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttc 196  Q
    ||||| ||||||| ||||| |  ||||||||  |||||||||||||||||||||| ||||||    
T  11830745 gaaagcttcaaataaaaaatttatttgaataacttattttaaaatgtcattctaattatttc 11830806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 29152794 - 29152863
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||| ||||||||||||  || |||||||||||||  |||||||||||||   | |||||||||||    
T  29152794 aaagaaagcttcaaatgaaaatttcgtttgaatagtttaacttaaaatgtcatttctagtatttcatcat 29152863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 13573308 - 13573252
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttca 197  Q
    |||||||||||||  | |||||| ||||| | ||||||||||||||||| |||||||    
T  13573308 ttcaaatgaaaaatccgtttgaaaagtttgtcttaaaatgtcattctaagtatttca 13573252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 43413350 - 43413410
Alignment:
Q  141 ttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||| ||||| || ||||||||||||||||| ||||  |||| ||| |||||||||||    
T  43413350 ttcaaataaaaaattcgtttgaatagtttattttgaaataccattttaagtatttcatcat 43413410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 30793035 - 30792972
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcat 198  Q
    |||||||||||||||||||  | ||||||||  |||||||||||||||||||||| ||||||||    
T  30793035 gaaagtttcaaatgaaaaatccgtttgaataacttattttaaaatgtcattctaagtatttcat 30792972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 32804156 - 32804088
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||||||||||  || ||||||||  |||||||||||| ||||| |||||||||||||||    
T  32804156 aaagaaagtttcaaatgaaaat-tcgtttgaataccttattttaaaatatcattttaaatatttcatcat 32804088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 201
Target Start/End: Complemental strand, 7793372 - 7793272
Alignment:
Q  102 tttgctataacttttttaacaaagt-tcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatca 200  Q
    ||||||| || |||||||||||||  | || || ||||||||| |||||||||  | |||||||||||||| ||||||||| | ||||| ||||||||||    
T  7793372 tttgctacaatttttttaacaaagaatttttaaggaaagtttcgaatgaaaaatccgtttgaatagtttatcttaaaatgtaagtctaagtatttcatca 7793273  T
Q  201 t 201  Q
    |    
T  7793272 t 7793272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 12650088 - 12650154
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| |||||||||||||  | ||| |||||||||| ||||||||||||| ||| |||||||||||    
T  12650088 gaaagcttcaaatgaaaaatacgtttaaatagtttatcttaaaatgtcattttaagtatttcatcat 12650154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 12158971 - 12159040
Alignment:
Q  132 aaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||  ||||||||||||| || ||||||||  |||| ||||||||||||| |||||| ||||||||    
T  12158971 aaagaaaacttcaaatgaaaaattcgtttgaataacttatcttaaaatgtcattttaaatagttcatcat 12159040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 21955682 - 21955638
Alignment:
Q  157 ttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||    
T  21955682 ttttgaatagtttatcttaaaatatcattctaagtatttcatcat 21955638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 15584285 - 15584340
Alignment:
Q  142 tcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttca 197  Q
    ||||||||||||  | ||||||||| |||| ||||||||||||||||| |||||||    
T  15584285 tcaaatgaaaaatccctttgaatagcttatcttaaaatgtcattctaagtatttca 15584340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 17186752 - 17186818
Alignment:
Q  135 gaaagtttcaaatgaaaaactct-tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||| ||||||||||||| ||| ||||||||| |||| |||||||||||| |||| |||||||||||    
T  17186752 gaaagcttcaaatgaaaaa-tctgtttgaatagcttatcttaaaatgtcatgctaagtatttcatcat 17186818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 116629 - 116728
Alignment:
Q  102 tttgctataacttttttaacaaagttcttaaaagaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||| ||||| |||||||||| |  | || || ||||| |||||||||||||  |||||||||||||||| ||||||| ||||  ||| |||||||||||    
T  116629 tttgttataatttttttaacagaaatttttaaggaaagcttcaaatgaaaaatccttttgaatagtttatcttaaaatatcatcttaagtatttcatcat 116728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 42278 - 42235
Alignment:
Q  158 tttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  42278 tttgaatagtttatcttaaaatgtcattctaagtatttcatcat 42235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1505 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1505
Description:

Target: scaffold1505; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 934 - 868
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtcattctaaatatttcatcat 201  Q
    ||||||||||||||||||| |  ||||||||  |||| ||||||||| |||||||| ||||||||||    
T  934 gaaagtttcaaatgaaaaatttgtttgaataacttatcttaaaatgtaattctaaaaatttcatcat 868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 183774 - 183822
Alignment:
Q  135 gaaagtttcaaatgaaaaactcttttgaatagtttattttaaaatgtca 183  Q
    |||||||||||||||||||  | |||||||| ||||| |||||||||||    
T  183774 gaaagtttcaaatgaaaaatccgtttgaataatttatcttaaaatgtca 183822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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