View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15123_low_9 (Length: 315)
Name: NF15123_low_9
Description: NF15123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15123_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 27078927 - 27078647
Alignment:
| Q |
20 |
tttattgaaatttagtaggtgtgactaattcatattaggttatgatttgtgagaggactaaacataattaagata--gagtattctagttcttatataaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||| | | |||||||||| |
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| T |
27078927 |
tttattgaaatttagtaggtgtgactaattcatattaggtcgtgatttgtgagaggactaaacattgtttagatatagagtattgtgatgcttatataaa |
27078828 |
T |
|
| Q |
118 |
tgaatttatctgaaaatttggttcttataaagtgccatgactctattcagtaggaacaatgtttattattttagtggtctcaac--tttgatagagtgat |
215 |
Q |
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||||||||||| ||||||||||| | ||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
27078827 |
tgaatttatctaaaaatttggttttgatagagtgcaatgactctattcagtgggaacaatgtttattattgtagtggtctcaacaatttgatagagtgat |
27078728 |
T |
|
| Q |
216 |
tcttgtttccgaaacctcatgaaagattgtcatgcaagtttcaattacatttaaggcattgcctttattacaggataaagg |
296 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27078727 |
tcttgtttccaaaacctcatgaaagattgtcatgcaagtttcaattacatttaaggcattgcctttattacgagataaagg |
27078647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 296
Target Start/End: Original strand, 26986426 - 26986662
Alignment:
| Q |
62 |
tgatttgtgagaggactaaacataattaagata--gagtattctagttcttatataaatgaatttatctgaaaatttggttcttataaagtgccatgact |
159 |
Q |
| |
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|||||||||||| |||||||||| || ||||| ||||| | | || ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26986426 |
tgatttgtgagaagactaaacattgtttagataaagagtactgtggtgcttatataaatgaatttatctgaaaatttggttcttataaagtgcaatgact |
26986525 |
T |
|
| Q |
160 |
ctattcagtaggaacaatgtttattattttagtggtctcaactttgatagagtgattcttgtttccgaaacctcatgaaagattgtcatgcaagtttcaa |
259 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26986526 |
ctattcagtaggaacaatgtttattattgtagtggtctcaactttgatagagtgattcttgtttccaaaacctcatgaaagattgtcatgcaagtttcaa |
26986625 |
T |
|
| Q |
260 |
ttacatttaaggcattgcctttattacaggataaagg |
296 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
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| T |
26986626 |
ttacatttaaggcattgcctttattacgagataaagg |
26986662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 27026233 - 27026460
Alignment:
| Q |
9 |
gattatactagtttattgaaatttagtaggtgtgactaattcatattaggttatgatttgtgagaggactaaacataattaag--atagagtattctagt |
106 |
Q |
| |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || || |||||||||| | | |
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| T |
27026233 |
gattttactaatttattgaaatttagtaggtgtgactaattcatattaggtcgttatttgtgagaggactaaacattgtttagatatagagtattgtgat |
27026332 |
T |
|
| Q |
107 |
tcttatataaatgaatttatctgaaaatttggttcttataaagtgccatgactctattcagta-ggaacaatgtttattattttagtggtctcaactttg |
205 |
Q |
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||||||||||||||||||||||||||||||||| | ||| ||||| ||||||| ||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
27026333 |
gcttatataaatgaatttatctgaaaatttggttttgatagagtgcaatgactc--ttcagtagggaacaatgtttgttattgtagtggtctcaactttg |
27026430 |
T |
|
| Q |
206 |
atagagtgattcttgtttccgaaacctcat |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
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| T |
27026431 |
atagagtgattcttgtttccaaaacctcat |
27026460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 27101012 - 27100967
Alignment:
| Q |
20 |
tttattgaaatttagtaggtgtgactaattcatattaggttatgat |
65 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||| |||||||||| |
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|
| T |
27101012 |
tttattgaaatttagtatgtgtgaataatttatataaggttatgat |
27100967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 34688485 - 34688764
Alignment:
| Q |
9 |
gattatactagtttattgaaatttagtaggtgtgactaattcatattaggttatgatttgtgagaggactaaacataattaagata--gagtattctagt |
106 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| || ||||| ||||||| | | |
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| T |
34688485 |
gattttactaatttattgaaatttagtaggtgtgactaattcatattaggtcgtgatttgtgagaggactatacattgtttagatatagagtattgtgat |
34688584 |
T |
|
| Q |
107 |
tcttatataaatgaatttatctgaaaatttggttcttataaagtgccatgactctattcagtaggaacaatgtttattattttagtggtctcaactttga |
206 |
Q |
| |
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||||||||||||| |||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34688585 |
gcttatataaatgagtttatctgaaaatttggtattgatagagtgcaatgactctattcagtaggaacaatgtttattattgtagtggtctcaactttga |
34688684 |
T |
|
| Q |
207 |
tagagtgattcttgtttccgaaacctcatgaaagattgtcatgcaagtttcaattacatttaaggcattgcctttattaca |
287 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34688685 |
tagagtgatacttgtttccaaaacctcatgaaagattgtcatgcaagtttcaattaca-ttaaggcattgcctttattaca |
34688764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 30231171 - 30231346
Alignment:
| Q |
121 |
atttatctgaaaatttggttcttataaagtgccatgactctattcagtaggaacaatgtttattattttagtggtctcaactttgatagagtgattcttg |
220 |
Q |
| |
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||||||||||||||||||| | ||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30231171 |
atttatctgaaaatttggtattgatagagtgcaatgactctattcagtagaaacaatgtttattattgtagtggtctcaactttgatagagtgattcttg |
30231270 |
T |
|
| Q |
221 |
tttccgaaacctcatgaaagattgtcatgcaagtttcaattacatttaaggcattgcctttattacaggataaagg |
296 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
30231271 |
tttccaaaacctcatgaaagattgtcatgcaagttttaattacatttaaggcattgcctttattacaagataaagg |
30231346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 296
Target Start/End: Original strand, 30228874 - 30229100
Alignment:
| Q |
62 |
tgatttgtgagaggactaaacataattaagata--gagtattctagttcttatataaatgaatttatctgaaaatttggttcttataaagtgccatgact |
159 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| || |||||||||||||||||||||||||||||||| | ||| ||||| |||||| |
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|
| T |
30228874 |
tgatttgtgagaggactaaacattgtttagatatagagtaccgcggtgcttatataaatgaatttatctgaaaatttggtattgatagagtgcaatgact |
30228973 |
T |
|
| Q |
160 |
ctattcagtaggaacaatgtttattattttagtggtctcaactttgatagagtgattcttgtttccgaaacctcatgaaagattgtcatgcaagtttcaa |
259 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
30228974 |
ctattcagcaggaacaatgtttattattgtagtggtctcaactttgatagagtgattcttgtttccaaaacctcatgaaagattgtcatggaagt----- |
30229068 |
T |
|
| Q |
260 |
ttacatttaaggcattgcctttattacaggataaagg |
296 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
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|
| T |
30229069 |
-----tttaaggcattgcctttattacaagataaagg |
30229100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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