View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15124_high_15 (Length: 268)
Name: NF15124_high_15
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 252
Target Start/End: Complemental strand, 45538644 - 45538441
Alignment:
| Q |
49 |
tgtgttctctatttgtgtttttcctatttgttttcttttgaacctaagttgttgttataacactaacattcagtgtgttcaaatgcagaatgtatccctc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45538644 |
tgtgttctctatttgtgtttttcctatttgttttcttttgaacctaagttgttgttctaacactaacattcagtgtgttcaaatgcagaatgtatccctc |
45538545 |
T |
|
| Q |
149 |
tctgttaatgacattcttgcatgctgtggccttctttgtggggctggctgtgctggggggactcccttttctgcatggatatacttagctcaccatggtg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45538544 |
tctgttaatgacattcttgcatgctgtggccttctttgtggggctggctgtgctggggggactcccttttctgcatggatatacttagctcaccatggtg |
45538445 |
T |
|
| Q |
249 |
ttgt |
252 |
Q |
| |
|
|||| |
|
|
| T |
45538444 |
ttgt |
45538441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 45545493 - 45545365
Alignment:
| Q |
124 |
tgttcaaatgcagaatgtatccctctctgttaatgacattcttgcatgctgtggccttctttgtggggctggctgtgctggggggactcccttttctgca |
223 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
45545493 |
tgttcaattgcagaatatatccctctctgttaacgaccttcttgcatgctgtggatttctttgtggggctggctgtgatggggggactcccatttatgca |
45545394 |
T |
|
| Q |
224 |
tggatatacttagctcaccatggtgttgt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
45545393 |
tggcggtacttagctcaccatggtgttgt |
45545365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 5455950 - 5456012
Alignment:
| Q |
47 |
tgtgtgttctctatttgtgtttttcctatttgttttcttttgaacctaagttgttgttataac |
109 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
5455950 |
tgtgtgttctctgtttgtgtttttcatatctgttttctttagaaccaaagttgttgttctaac |
5456012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 28026980 - 28026909
Alignment:
| Q |
20 |
aattggcagaactccgcgatcaagt-tctgtgtgttctctatttgtgtttttcctatttgttttcttttgaac |
91 |
Q |
| |
|
||||||| ||||||| ||||||| | ||| ||||||||||||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
28026980 |
aattggccgaactccacgatcaaatatct-tgtgttctctatttgtgtttttcgtatctttttacttttgaac |
28026909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University