View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15124_high_4 (Length: 449)

Name: NF15124_high_4
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15124_high_4
NF15124_high_4
[»] chr2 (8 HSPs)
chr2 (109-441)||(14538293-14538643)
chr2 (270-440)||(14553955-14554125)
chr2 (34-114)||(16871538-16871618)
chr2 (20-107)||(10148595-10148682)
chr2 (394-440)||(14526122-14526168)
chr2 (22-107)||(10147786-10147871)
chr2 (372-437)||(14548602-14548667)
chr2 (109-165)||(14553813-14553869)
[»] chr5 (5 HSPs)
chr5 (20-107)||(43379466-43379553)
chr5 (20-107)||(43378572-43378659)
chr5 (27-107)||(3636384-3636464)
chr5 (20-108)||(11336275-11336363)
chr5 (34-114)||(33529729-33529809)
[»] chr6 (1 HSPs)
chr6 (20-107)||(13207346-13207433)
[»] chr7 (6 HSPs)
chr7 (16-107)||(42253054-42253144)
chr7 (16-107)||(42252829-42252923)
chr7 (27-107)||(48204065-48204145)
chr7 (27-101)||(46295636-46295710)
chr7 (27-107)||(18947286-18947366)
chr7 (71-107)||(25675779-25675815)
[»] chr8 (7 HSPs)
chr8 (17-109)||(39308666-39308758)
chr8 (16-107)||(42578709-42578800)
chr8 (27-107)||(6462604-6462684)
chr8 (27-109)||(42503910-42503992)
chr8 (16-101)||(39309646-39309731)
chr8 (17-102)||(42503031-42503116)
chr8 (45-113)||(43235425-43235493)
[»] chr3 (3 HSPs)
chr3 (18-109)||(34936713-34936804)
chr3 (17-107)||(55444559-55444649)
chr3 (67-107)||(40613828-40613868)
[»] chr4 (2 HSPs)
chr4 (27-107)||(9483652-9483732)
chr4 (16-108)||(39310395-39310487)
[»] chr1 (1 HSPs)
chr1 (71-107)||(15668312-15668348)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 109 - 441
Target Start/End: Original strand, 14538293 - 14538643
Alignment:
Q  109 attttgaccagacatgaattgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctcccttta 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538293 attttgaccagacatgaatcgccgagttctttcattttatattttggagaatgtttaactactctttagatatttgcaaaaatgggatcttctcccttta 14538392  T
Q  209 tggcgagcacagctgttgtgtcagtcagtctag------------------cctttatgtaggagaggaatacagaccaaggtggctgtttgattgattt 290  Q
    |||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538393 tggcgagcacagctgttgtgtcagtcagtctagagaaaatctgactgtctgcctttatgtaggagaggaatacagaccaaggtggctgtttgattgattt 14538492  T
Q  291 tgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcagaagtaatagttctggtaatctgttgtggaaa 390  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14538493 tgtgcagaaatagcatttccgtcatatactttcgtcccccaaccattattagttgattaatgatatcagaagtaataattctggtaatctgttgtggaaa 14538592  T
Q  391 tgaaagggatatatttcttggaatgcttttccagtttttagcatgcctttg 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14538593 tgaaagggatatatttcttggaatgcttttccagtttttagcatgcctttg 14538643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 440
Target Start/End: Original strand, 14553955 - 14554125
Alignment:
Q  270 aggtggctgtttgattgattttgtgcagaaatagcatttccgtcatctactttcgtcccccaaccattattagttgattaatgatatcaga-agtaatag 368  Q
    |||||| |||||||||||||||||||| |||||| |||  | ||||||||| || | ||| |||| ||||||||| || | |||| ||| | ||| |||     
T  14553955 aggtggttgtttgattgattttgtgcataaatagtattggcatcatctactatcattcccgaacccttattagtttataactgatctcacacagtcatac 14554054  T
Q  369 ttctggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgccttt 440  Q
    || ||||||| ||||||| ||||||||| ||| |||||||||| | |||||| ||| |||||||||||||||    
T  14554055 ttttggtaatgtgttgtgaaaatgaaagagatgtatttcttgggaggctttt-caggttttagcatgccttt 14554125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 16871538 - 16871618
Alignment:
Q  34 tttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcgattttg 114  Q
    ||||| ||||||||  |||||| ||| || |||||||||||| ||  |||| ||||||||||||||||||||||| |||||    
T  16871538 tttgccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactcgtttttg 16871618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 10148595 - 10148682
Alignment:
Q  20 cccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||| |||||||||| | |||||||||||||| |||   || |||||| ||||||||| |||| |||||||||  ||| |||||||    
T  10148595 cccttgattttatttttaccacatgtcacacatccaaggaatgaaatggggtaaatggaggcttcctaaatggagtgaagttgaactc 10148682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 14526122 - 14526168
Alignment:
Q  394 aagggatatatttcttggaatgcttttccagtttttagcatgccttt 440  Q
    |||||||||||||||| ||| |||||||||| ||||||| |||||||    
T  14526122 aagggatatatttcttagaaggcttttccaggttttagcgtgccttt 14526168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 10147871 - 10147786
Alignment:
Q  22 cttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||| |||||||||||| |||||||||||||| ||    || |||||||||||||||| |||| ||| |||||  ||| |||||||    
T  10147871 cttgattttatttttgccacatgtcacacatccaacgaatgaaatgggataaatggaggcttcctaactggagtgaagttgaactc 10147786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 437
Target Start/End: Original strand, 14548602 - 14548667
Alignment:
Q  372 tggtaatctgttgtggaaatgaaagggatatatttcttggaatgcttttccagtttttagcatgcc 437  Q
    ||||||| | ||||| ||||| ||||||| |||||||||||| |||||| ||| ||| ||||||||    
T  14548602 tggtaatgtcttgtgaaaatggaagggatgtatttcttggaaagctttttcaggtttcagcatgcc 14548667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 14553813 - 14553869
Alignment:
Q  109 attttgaccagacatgaattgccgagttctttcattttatattttggagaatgttta 165  Q
    ||||||||||| ||||  |  ||| ||||||||||||| ||||||||||||||||||    
T  14553813 attttgaccagtcatggttcaccgtgttctttcattttttattttggagaatgttta 14553869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 43379466 - 43379553
Alignment:
Q  20 cccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43379466 cccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 43378659 - 43378572
Alignment:
Q  20 cccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  43378659 cccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaagatgaactc 43378572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 3636384 - 3636464
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||| |||| | ||||||||  |||||| ||| || || |||| ||||||||||||| ||||||||||||||||||||||    
T  3636384 ttttaatttttccacatgtcagtcatctatgagttgaaaagggaaaaatggagccttcttaaatggagcaaagatgaactc 3636464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 11336363 - 11336275
Alignment:
Q  20 cccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcg 108  Q
    ||||||||||||| ||||  |||||||||||| |||| |||||||  |||  |||||||| |||| ||||||||  |||||||||||||    
T  11336363 cccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaagaaagatgaactcg 11336275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 33529809 - 33529729
Alignment:
Q  34 tttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcgattttg 114  Q
    ||||| ||||||||  |||||| ||| || |||||||||||| ||  |||| ||||||||||||||||||||||| |||||    
T  33529809 tttgccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactcgtttttg 33529729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 13207433 - 13207346
Alignment:
Q  20 cccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  13207433 cccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagtaaagatgaactc 13207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 42253054 - 42253144
Alignment:
Q  16 tcagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||||||| |||||||||||  | |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  42253054 tcagcccttgtttttatttttgaca-atgtcacacatctaagagttggaatgggataaattgaggcttcataaatggagcaaacatgaactc 42253144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 42252923 - 42252829
Alignment:
Q  16 tcagcccttgcttttatttttgctac---atgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||| |||||||||||||||| ||   ||||||| ||||||| |||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  42252923 tcagcctttgcttttatttttgccaccatatgtcacgcatctaaaagctggaatgtggtaaatggaggcttcataaatggagcaaagatgaactc 42252829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 48204065 - 48204145
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||| |||||| ||||||||   ||||| ||| || || |||| ||||||||||||| ||||| ||||||||||||||||    
T  48204065 ttttaattttgccacatgtcagttatctatgaggtgaaaagggaaaaatggagccttcttaaattgagcaaagatgaactc 48204145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 46295636 - 46295710
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 101  Q
    |||| |||| || ||||||||||||||||  |  || || |||||||||||||| || |||||||||||||||||    
T  46295636 ttttgttttagccacatgtcacacatctataaaatgaaaagggataaatggagcattgataaatggagcaaagat 46295710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 18947366 - 18947286
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||| ||||| |||||||  ||||||| ||  || ||||| |||||||||| || | ||||||||||||||||| ||||    
T  18947366 ttttatatttgccacatgtccaacatctatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 18947286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 25675779 - 25675815
Alignment:
Q  71 taaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||||||||  ||||||||||||||||||||||||    
T  25675779 taaatggagccaacataaatggagcaaagatgaactc 25675815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 39308758 - 39308666
Alignment:
Q  17 cagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcga 109  Q
    ||||||||  ||||| |||||| ||||||||  |||||| ||| || || |||||||||||||  ||| ||||||||||||||||| ||||||    
T  39308758 cagcccttcattttagttttgccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatggactcga 39308666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 42578800 - 42578709
Alignment:
Q  16 tcagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||| ||| |||||||||||| |||||||| ||||||| ||  || |||||| ||||| ||||   ||||||||||||||||||| ||||    
T  42578800 tcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactc 42578709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 6462604 - 6462684
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||||||||| |||||||| ||||||| ||  || |||||| ||||| ||||   ||||||||||||||||||| ||||    
T  6462604 ttttatttttgccacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactc 6462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 42503910 - 42503992
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcga 109  Q
    |||||||||| | |||||||||||||||| ||  ||||||||| ||||| |||    | ||||||||||||||||| ||||||    
T  42503910 ttttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagcaaagatggactcga 42503992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 39309646 - 39309731
Alignment:
Q  16 tcagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 101  Q
    |||||||||  ||||  |||||| ||||||||  |||||| ||| || || |||||||||||||  ||| ||||||||||||||||    
T  39309646 tcagcccttcatttttgttttgccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagat 39309731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 42503116 - 42503031
Alignment:
Q  17 cagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatg 102  Q
    ||||| ||| |||||||||| |||||||||||||||||| ||  || |||||| ||||| |||    | |||||||||||||||||    
T  42503116 cagccattgattttattttttctacatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagcaaagatg 42503031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 43235493 - 43235425
Alignment:
Q  45 tcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcgatttt 113  Q
    ||||||||||| ||  || || ||||||||||||| |||  ||||||||||||||||| |||| |||||    
T  43235493 tcacacatctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatgcactccatttt 43235425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 34936804 - 34936713
Alignment:
Q  18 agcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcga 109  Q
    |||| ||| |||||||||||| |||||||||| ||||| ||  || || |||||||||||||   |  ||||||||||||||||| ||||||    
T  34936804 agccattggttttatttttgccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatgcactcga 34936713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 55444559 - 55444649
Alignment:
Q  17 cagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||||||| |||||  ||||| |||||||||||||| |  |  || || |||||||||||||| ||| |||||| |||||||||| ||||    
T  55444559 cagcccttgtttttacatttgccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaagatggactc 55444649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 40613828 - 40613868
Alignment:
Q  67 gggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||||||||||| |||  ||||||||||||||||||||||    
T  40613828 gggataaatggaggcttgctaaatggagcaaagatgaactc 40613868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 9483652 - 9483732
Alignment:
Q  27 ttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactc 107  Q
    ||||||| | || |||||||||||||||| ||  || || |||||||||||| ||||   |||||||||||||||| ||||    
T  9483652 ttttattatggccacatgtcacacatctatgaagtgaaaagggataaatggaacctttgcaaatggagcaaagatgcactc 9483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 39310487 - 39310395
Alignment:
Q  16 tcagcccttgcttttatttttgctacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagatgaactcg 108  Q
    |||||| ||| |||||||||| | |||||||| |||||||  |  || |||||||||||| |||   || ||||||||||||||||| |||||    
T  39310487 tcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggactcg 39310395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 15668312 - 15668348
Alignment:
Q  71 taaatggagccttcataaatggagcaaagatgaactc 107  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  15668312 taaatggagccttcttaaatggagcaaagatggactc 15668348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University