View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15124_high_6 (Length: 400)
Name: NF15124_high_6
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 54218170 - 54218536
Alignment:
| Q |
18 |
ctaagcagcataaggaacatgaattcagaactattgtgtcatagcctattttgatgcatggcaaagatccagggagaagtattgcaaaagctggtatcaa |
117 |
Q |
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| T |
54218170 |
ctaagcagcataaggaacatgaattcagaactattgtgtcgtagcctattttgatgcatggcaaagatccagggagaagtattgcaaaatctggtatcaa |
54218269 |
T |
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| Q |
118 |
agggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcaagaaggggcgttatacatgtaaaaccattgatgattcaattt |
217 |
Q |
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| T |
54218270 |
agggaattattgaagttatctaagagaatcttggggccaaaccaagatacatgatgcgagaaggggcgttatacatgtaaaaccattgatgattcaattt |
54218369 |
T |
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| Q |
218 |
tgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacgatca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218370 |
tgattaaaggactttcattcctctacaaatggaatcaagcagaatgtgcaaaccatctttaataacattagttggttgcttggtaatgaagatacgatca |
54218469 |
T |
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| Q |
318 |
agtttttgatctgcgttccttacaataacttgacattcctcgtaggacaactagctacatatatatt |
384 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
54218470 |
agtttttgatctgtgttccttacaataacttgacattcttcgtaggacaactagctacatatatatt |
54218536 |
T |
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