View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15124_high_8 (Length: 330)

Name: NF15124_high_8
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15124_high_8
NF15124_high_8
[»] chr3 (2 HSPs)
chr3 (15-102)||(8089889-8089976)
chr3 (213-311)||(8090087-8090186)
[»] chr4 (1 HSPs)
chr4 (21-95)||(7729356-7729430)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 8089889 - 8089976
Alignment:
Q  15 cataggcatgatgaaggatattggatttcaagcttataggttttccatttcttggtcccgaatattacctagtgagaaactgattaag 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8089889 cataggcatgatgaaggatattggatttcaagcttataggttttccatttcttggtcccgaatattacctagtgagaaattgattaag 8089976  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 8090087 - 8090186
Alignment:
Q  213 actctgcatataaattaatgggtgaatttaatatcattgcatatatgtaac-nnnnnnnntgacaatgaacatataataagacatgtctagttccggcct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  8090087 actctgcatataaattaatgggtgaatttaatatcattgcatatatgtaacaaaaaaaaaagacaatgaacatataataagacatgtctagttccggcct 8090186  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 7729356 - 7729430
Alignment:
Q  21 catgatgaaggatattggatttcaagcttataggttttccatttcttggtcccgaatattacctagtgagaaact 95  Q
    |||||||||||||||||||||| | |||||||||||||| || ||||||||| || || ||||| ||||| ||||    
T  7729356 catgatgaaggatattggatttaatgcttataggttttcgatctcttggtccagattactacctcgtgagtaact 7729430  T

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