View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15124_high_9 (Length: 329)
Name: NF15124_high_9
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 22039788 - 22039480
Alignment:
| Q |
1 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatagaggttttccatcatgaactaacactggagttttcttgtgcactggattgtatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22039788 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatagaggttttccatcatgaaccaacactggagttttcttgtgcactggattgtatt |
22039689 |
T |
|
| Q |
101 |
gaagaagttgaggactcttgttgaaacgatcttcttctatgttctcatatggtataccttttagcttaagggtcaatactaccctcaaagtaaaaggact |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22039688 |
gaagaagttgaggactcttgttgaaacgatcttcctctatgttctcatatggtataccttttagcttaagggtcaatactacccttaaagtaaaaggact |
22039589 |
T |
|
| Q |
201 |
gtaccaaaatccatgtagcttcacttgatctgccatcttaatttaatttgtcttatgctaagctagcattgctcttgcctttatatagtgatagttaatt |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039588 |
gtaccaaaatccatgtatcttcacttgatctgccatcttaa-ttaatttgtcttatgctaagctagcattgctcttgcctttatatagtgatagttaatt |
22039490 |
T |
|
| Q |
301 |
catggatttc |
310 |
Q |
| |
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|||||||||| |
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| T |
22039489 |
catggatttc |
22039480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40325954 - 40326177
Alignment:
| Q |
1 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatagaggttttccatcatgaactaacactggagttttcttgtgcactggattgtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||| |||||||| | ||| || |||| |
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| T |
40325954 |
ggccatatctcatcaatgtattcaacaatgatcattgactcgcatatgggttttccatcatgaaccaacactggagtcttcttgtgtattgggttatatt |
40326053 |
T |
|
| Q |
101 |
gaagaagttgaggactcttgttgaaacgatcttcttctatgttctcatatggtataccttttagcttaagggtcaatactaccctcaaagtaaaaggact |
200 |
Q |
| |
|
||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| || | |||| ||||||||||||||||| ||||||| |
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|
| T |
40326054 |
gaagaagcagaggacttttattgaaacgatcttcctctatgttctcatatggtataccctttagattcaaggtccatactaccctcaaagtataaggact |
40326153 |
T |
|
| Q |
201 |
gtaccaaaatccatgtagcttcac |
224 |
Q |
| |
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||||||||||| ||||| ||||| |
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| T |
40326154 |
ataccaaaatccgtgtagtttcac |
40326177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40338300 - 40338523
Alignment:
| Q |
1 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatagaggttttccatcatgaactaacactggagttttcttgtgcactggattgtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| | ||||||||| |||||| | || || || || | |
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|
| T |
40338300 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatattggtttttcatcgtgaatcagcactggagtattcttgcgtacggggttatagt |
40338399 |
T |
|
| Q |
101 |
gaagaagttgaggactcttgttgaaacgatcttcttctatgttctcatatggtataccttttagcttaagggtcaatactaccctcaaagtaaaaggact |
200 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | || |||||| |||| ||||| |||||||||||||| |
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| T |
40338400 |
gaagaagttgagagctcttattgaaacgatcttcctctatgttctcatatggtatacctttcaaatttagggtccatacaacccttaaagtaaaaggact |
40338499 |
T |
|
| Q |
201 |
gtaccaaaatccatgtagcttcac |
224 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
40338500 |
ataccaaaatccatgtagtttcac |
40338523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40343484 - 40343707
Alignment:
| Q |
1 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatagaggttttccatcatgaactaacactggagttttcttgtgcactggattgtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||| ||||||| | ||| || |||| |
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|
| T |
40343484 |
ggccatatctcatcaatgtattcaacaatgatcatggactcacatattggttttccatcatgaattagcactggagtcttcttgtatattgggttatatt |
40343583 |
T |
|
| Q |
101 |
gaagaagttgaggactcttgttgaaacgatcttcttctatgttctcatatggtataccttttagcttaagggtcaatactaccctcaaagtaaaaggact |
200 |
Q |
| |
|
||||||| ||||||| || ||||| |||| ||| ||||||||||||||||||||||| || | || | |||| |||| ||||| |||||||||||||| |
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|
| T |
40343584 |
gaagaagcagaggacttttattgaagcgatattcctctatgttctcatatggtatacccttcaaatttaaggtccatacaacccttaaagtaaaaggact |
40343683 |
T |
|
| Q |
201 |
gtaccaaaatccatgtagcttcac |
224 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
40343684 |
ataccaaaatccatgtagtttcac |
40343707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40331171 - 40331388
Alignment:
| Q |
1 |
ggccatatctcatcaatgtattcaacaatgatcatagactcacatagaggttttccatcatgaactaacactggagttttcttgtgcactggattgtatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| | |||||||||||| ||||| | ||| || |||| |
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|
| T |
40331171 |
ggccatatctcatcaatgtattcaacaataatcatggactcacatatgggttttccatcatgaaccagcactggagtttttttgtgtattgggttatatt |
40331270 |
T |
|
| Q |
101 |
gaagaagttgaggactcttgttgaaacgatcttcttctatgttctcatatggtataccttttagcttaagggtcaatactaccctcaaagtaaaaggact |
200 |
Q |
| |
|
|||||||||||||| || | ||||| ||||||||||||| | ||||| |||||||| || || || |||||| |||| ||||| ||||| |||||||| |
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| T |
40331271 |
gaagaagttgaggagtcctattgaagtgatcttcttctatactatcatacggtatacccttcagatttagggtccataccacccttaaagtgaaaggact |
40331370 |
T |
|
| Q |
201 |
gtaccaaaatccatgtag |
218 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
40331371 |
ataccaagatccatgtag |
40331388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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