View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15124_low_1 (Length: 743)
Name: NF15124_low_1
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 29259323 - 29259618
Alignment:
| Q |
12 |
agcataggcaaaagaaaatgtgggaacatcaaatagtagaagttggaaggtcagtactacagtagtacgagcatagcctaatatgtgtaaagtggtccct |
111 |
Q |
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| T |
29259323 |
agcatgggcaaaagaaaatgtgggaacatcaaattgtagaagttggaaggtcattactacagta---cgagtatagcctaatatgtgtaaagtggtccct |
29259419 |
T |
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| Q |
112 |
tccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaagaaac |
211 |
Q |
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| T |
29259420 |
tccccaccccaaagccaaaactacaaagtacaaacaaacatgtatagttggaagaggacccacctatcttgtagcaacaaaaggaagaagaacaagaaac |
29259519 |
T |
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| Q |
212 |
gcatgcatatatttcgtatagaatgaacctttaaaaacagacggcagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgttttaag |
311 |
Q |
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| T |
29259520 |
gcatgc--atatttcgtatagaatgaacctttaaaaacagacggtagtagttggtggtacaatctccatgatatacgtctcaaactatatgcgttttaag |
29259617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 465 - 727
Target Start/End: Original strand, 29259719 - 29259982
Alignment:
| Q |
465 |
taatgatagagagaattaa--attttatctatttaatactttgtactccattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
562 |
Q |
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| T |
29259719 |
taatgatagagagaatttataattttatctatttaatactttgtacttcattttgaatacatttatatggtcaaacattaataattaagttgcaaaagag |
29259818 |
T |
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| Q |
563 |
aaatgtatttattttttgagagaaaaagaggaatgtattaattgatcatgacagatggtaagtagcagccataaatgtgtaacccttcttcatgtctatg |
662 |
Q |
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| T |
29259819 |
aaatgtatttattttttgagagaaaaagagaaatgtattaattgatcatgacagatggtaagtagcagccataaa--tgtaacccttcttcatgtctatg |
29259916 |
T |
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| Q |
663 |
taataaacatacggtggataga-taaaaacttatagtgggaccatgtaatgtatacactttgtttt |
727 |
Q |
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| T |
29259917 |
taataaacatacggtggatagattaaaaacttatagtgggaccatgtaatgcatacactttgtttt |
29259982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 428
Target Start/End: Original strand, 29259673 - 29259717
Alignment:
| Q |
384 |
gcaatttacgttttccttcattaaagtaatccaagtttagcttat |
428 |
Q |
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| T |
29259673 |
gcaatttacgttttccttcattaaagtaatccaagtttagcttat |
29259717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 29261264 - 29261230
Alignment:
| Q |
189 |
caaaaggaagaagaacaagaaacgcatgcatatat |
223 |
Q |
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| T |
29261264 |
caaaagaaagaagaacaagaaacgcatgcatatat |
29261230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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