View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15124_low_10 (Length: 327)
Name: NF15124_low_10
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 6170116 - 6169808
Alignment:
| Q |
1 |
tctttgagattgttgttggtgatgttgnnnnnnngaatattggtgatcaagtattgataaatgaattattcatcgatggaaattccttgagagttgatga |
100 |
Q |
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| T |
6170116 |
tctttgagattgttgttggtgatgttgtttttttgaatattggtgatcaagtattgataaatggattattcatcgatggaaattccttgagagttgatga |
6170017 |
T |
|
| Q |
101 |
atgaagcatgaccagtgcgagtgatcatgtagagattagtagtagaaaccctcatccttttttggaacaaaagttgtcgacgaatggatgaaagtgtaca |
200 |
Q |
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| T |
6170016 |
atgaagcatgaccagtgcgagtgatcatgtagagattagtag---aaaccctcatccttttttggaacaaaagttgtcgacgaatgcatgaaagtgtaca |
6169920 |
T |
|
| Q |
201 |
cgttacgttggtcgatttgaaaacaccaacgggacaaatgaggctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttca |
300 |
Q |
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| T |
6169919 |
cgttacattggtcgatttgaaaacaccaacgggacaaatgaagctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttca |
6169820 |
T |
|
| Q |
301 |
tcccattgttcc |
312 |
Q |
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| T |
6169819 |
tcccattgttcc |
6169808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 6187060 - 6186927
Alignment:
| Q |
3 |
tttgagattgttgttggtgatgttgnnnnnnngaatattggtgatcaagtattgataaatgaattattcatcgatggaaattccttgagagttgatgaat |
102 |
Q |
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| T |
6187060 |
tttgatattgttgttggtgatgttgtttgtttgaagattggtgatcaagtaccggctgatggattgttcgtagatggacattcgttgagagttgatgaat |
6186961 |
T |
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| Q |
103 |
gaagcatgaccagtgcgagtgatcatgtagagat |
136 |
Q |
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| T |
6186960 |
cgagcatgaccggtgagagtgatcatgtagagat |
6186927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 4243932 - 4243869
Alignment:
| Q |
75 |
gatggaaattccttgagagttgatgaatgaagcatgaccagtgcgagtgatcatgtagagatta |
138 |
Q |
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| T |
4243932 |
gatggacattcgttgagagttgatgaatcgagcatgaccggtgagagcgatcatgtagagatta |
4243869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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