View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15124_low_11 (Length: 308)

Name: NF15124_low_11
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15124_low_11
NF15124_low_11
[»] chr3 (6 HSPs)
chr3 (3-292)||(45736151-45736440)
chr3 (1-87)||(8705602-8705688)
chr3 (1-87)||(9057489-9057575)
chr3 (1-87)||(51976650-51976736)
chr3 (1-87)||(36684795-36684881)
chr3 (2-87)||(4978550-4978636)
[»] chr4 (1 HSPs)
chr4 (1-87)||(43989392-43989478)
[»] chr2 (3 HSPs)
chr2 (1-87)||(36364930-36365016)
chr2 (1-87)||(24543103-24543189)
chr2 (1-87)||(29894456-29894542)
[»] chr1 (5 HSPs)
chr1 (1-87)||(6784168-6784254)
chr1 (1-87)||(20639480-20639566)
chr1 (1-83)||(32989023-32989105)
chr1 (1-87)||(11351732-11351818)
chr1 (1-81)||(21515101-21515181)
[»] chr8 (1 HSPs)
chr8 (1-87)||(18481123-18481209)
[»] chr7 (2 HSPs)
chr7 (1-87)||(24808886-24808972)
chr7 (1-87)||(23820413-23820499)
[»] chr6 (1 HSPs)
chr6 (1-87)||(942583-942669)
[»] chr5 (2 HSPs)
chr5 (3-87)||(36779537-36779621)
chr5 (3-60)||(41197493-41197550)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 45736440 - 45736151
Alignment:
Q  3 aataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaacaagacaatatgaaagc 102  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45736440 aataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaacttgaaatccaaaacaaaatcaacaagacaatatgaaagc 45736341  T
Q  103 ttgtttgccttcgggtagttttcagcaaattaatgtgctaaaactactttgttgcatttggttcctaatcttaactaagttcttgctcactatttactaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45736340 ttgtttgccttcgggtagttttcagcaaattaatgtgctaaaactactttgttgtatttggttcctaatcttaactaagttcttgctcactatttactaa 45736241  T
Q  203 ataaatagtatgcaatatgcactttctacttgaaaattatattatattatatgcaacccagtgaaacatctaataattaaatttataatc 292  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  45736240 ataaatagtatgcaatatgcactttctacttgaaaaatatattatattatatgcaacccagtgaaacatctaacaattaaaattataatc 45736151  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8705688 - 8705602
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||| ||||||  ||  ||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  8705688 tgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaaca 8705602  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9057575 - 9057489
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||| ||||||  ||  ||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  9057575 tgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttggaatccaaaacaaaatcaaca 9057489  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 51976736 - 51976650
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  51976736 tgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca 51976650  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36684881 - 36684795
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||| ||||||||||||||||| ||||||  ||  ||| |||||||| ||| ||||||||||||| ||||||||||||||||||||    
T  36684881 tgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttgcaatccaaaacaaaatcaaca 36684795  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 4978550 - 4978636
Alignment:
Q  2 gaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaa-caacaaacttggaatccaaaacaaaatcaaca 87  Q
    |||||||||||||||||| |||  |||||  ||  ||| |||||||||||| || ||||| | ||||||||||||||||||| ||||    
T  4978550 gaataatacaacctagtttactattatcacctaggtttgaattaaaacgttcaaacaacatatttggaatccaaaacaaaattaaca 4978636  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43989392 - 43989478
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  43989392 tgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaacttgcaatccaaaacaaaatcaaca 43989478  T

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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 36365016 - 36364930
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  36365016 tgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttggaatccaaaacaaaatcaaca 36364930  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24543189 - 24543103
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  24543189 tgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca 24543103  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29894456 - 29894542
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    |||||||||||| |||||||||||||||||  ||  ||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  29894456 tgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca 29894542  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6784254 - 6784168
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  |||||||||||||||| ||||| | ||||| ||||||||||||||||||||    
T  6784254 tgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagacttgcaatccaaaacaaaatcaaca 6784168  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20639566 - 20639480
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||| ||||||  ||  ||| |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  20639566 tgaataatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaaca 20639480  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 32989023 - 32989105
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatc 83  Q
    ||||||||||||||||||||||||||||||  ||  |||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  32989023 tgaataatacaacctagttcactgctatcacgtaagtttaaattaaaacgttcaacaacatacttggaatccgaaacaaaatc 32989105  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11351732 - 11351818
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  11351732 tgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca 11351818  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 21515181 - 21515101
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaa 81  Q
    |||| |||||||||||||||||||||||||  ||  ||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  21515181 tgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttgcaatccaaaacaaaa 21515101  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18481209 - 18481123
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||||||||||  ||  ||| |||||||| ||| ||||||| ||||| ||||||||||||||||||||    
T  18481209 tgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaaca 18481123  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24808886 - 24808972
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||| ||||||  ||  ||| |||||||||| | ||||||| |||||||||| |||||||||||||||    
T  24808886 tgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagacttggaatctaaaacaaaatcaaca 24808972  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 23820499 - 23820413
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||| ||||||||||||||||| ||||||  ||  ||| |||||||  ||  ||||||| ||||||||||||||||||||| ||||    
T  23820499 tgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagacttggaatccaaaacaaaattaaca 23820413  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 942669 - 942583
Alignment:
Q  1 tgaataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||||| ||||||  ||  ||| | |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  942669 tgaataatacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagacttggaatccaaaacaaaatcaaca 942583  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 36779537 - 36779621
Alignment:
Q  3 aataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaacaaacttggaatccaaaacaaaatcaaca 87  Q
    ||||||||||||||||||||| || ||| |||  ||| |||||||||||| ||||| | ||||||||||||||| ||||||||||    
T  36779537 aataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagacttggaatccaaaataaaatcaaca 36779621  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 41197493 - 41197550
Alignment:
Q  3 aataatacaacctagttcactgctatcatttacatttaaattaaaacgttgaacaaca 60  Q
    ||||||||||||||||||||||||||||  ||  ||| |||||||| ||| |||||||    
T  41197493 aataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaaca 41197550  T

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