View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15124_low_13 (Length: 300)
Name: NF15124_low_13
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 10010304 - 10010577
Alignment:
| Q |
13 |
atactaatttaagctcaaatcaatttgatagcaatatattttaccggattctattcaacctatataaggacaaaaataaaagcaataaccgtgcatccta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
10010304 |
atactaatttaagctcaaatcaatttgacagcaatatattttaccggattctattcaacctatataaggataaaaataaaagcaattaccgtgcatccta |
10010403 |
T |
|
| Q |
113 |
tgtaactaaaattgttaattgcatgttacacatttattgtagaaaaaggagaacagaagccgattccaatcgacctatatatctacatttcaaaagacca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10010404 |
tgtaactaaaattgttaattgcatgttacacatttattgtagaaaaaggagaacagaagccgattccaatcaacctatatatctacatttcaaaagacca |
10010503 |
T |
|
| Q |
213 |
aa-aggttaacatgaaattattgattttctcaacacatatctacacaatacgaagcaaattttttagaaagtac |
285 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10010504 |
aagaggttaacatgaaattattgattttctcaacacatatctacacaatacgaagcaaattttttaggaagtac |
10010577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University