View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15124_low_17 (Length: 219)

Name: NF15124_low_17

Description: NF15124

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15124_low_17

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 192; E-Value: 1e-104

Query Start/End: Original strand, 12 - 203

Target Start/End: Complemental strand, 41571181 - 41570990

Alignment:

Q	12	aagaatatgatgagactgcacttatatttccagtaaactgattatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttt	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41571181	aagaatatgatgagactgcacttatatttccagtaaactgattatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttt	41571082	T

Q	112	tccacttagtaaattgttatttaatagtaaataacctaagttttgaaaccctgttattttgttgggtagaggaccctttaatttattataag	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41571081	tccacttagtaaattgttatttaatagtaaataacctaagttttgaaaccctgttattttgttgggtagaggaccctttaatttattataag	41570990	T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 12 - 119

Target Start/End: Original strand, 30019877 - 30019982

Alignment:

Q	12	aagaatatgatgagactgcacttatatttccagtaaactgattatttgatagatccaacattgtcaaagatggtatggataaacaccatgaaggaatttt	111	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|
T	30019877	aagaacatgatgagattgcacttctatttcttgtaaatttatt--ttgatagatccaatcttgtcatagatggtaaatataaacatcatgaagaaatttt	30019974	T

Q	112	tccactta	119	Q
		\|\|\|\|\|\|\|\|
T	30019975	tccactta	30019982	T

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