View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15124_low_2 (Length: 650)
Name: NF15124_low_2
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 372 - 636
Target Start/End: Complemental strand, 8725757 - 8725493
Alignment:
| Q |
372 |
ttcccctttctattattcttgaggaggttttctctgtccctttaaatcaaagattcacatttcaccatcaaactgtcagttatgagtcatgcataagttc |
471 |
Q |
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| T |
8725757 |
ttcccctttctattattcttgaggaggttttctctgtccctttaaatcaaagattcacatttcaccatcaaactgtcagttatgagtcatgcataagttc |
8725658 |
T |
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| Q |
472 |
acaaacaaaactaattcaacctaggcatttcattcaagtactttattcctaatccataaaataaaatcaccctgcattgcaaaaatgtggcaacactcat |
571 |
Q |
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| T |
8725657 |
acaaacaaaactaattcaacctaggcatttcattcaagtactttattcctaatccataaaagaaaatcaccctgcattgcaaaaatgtggcaacactcat |
8725558 |
T |
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| Q |
572 |
gttaccataatggatggttcagaaacaaatggaaacagacttgttggaattgattggaatgaaac |
636 |
Q |
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| T |
8725557 |
gttaccataatggatggttcacaaacaaatggaaacagacttgttggaattgattggaatgaaac |
8725493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 8726259 - 8726024
Alignment:
| Q |
13 |
atacttcttgggagaattggtcagacttatgcaacaccttcaatcttaaggacaaggttgatttcgattagggcggcattgttatgagcaaagcccaaag |
112 |
Q |
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| T |
8726259 |
atacttcttgggagaattggtcagacttatgcaacaccttcaatcttaaggacaaggttgatttcgattagggcggcattgttatgagcaaagcccaaag |
8726160 |
T |
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| Q |
113 |
aaaagactccaactcagacccagttactaaagatggttcaagtgactcaattatgatagaaaagactccaacttgtgcagaaacagttaaaccagaaaac |
212 |
Q |
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| T |
8726159 |
aaaagactccaactcagacccagttactaaagatggttcaagtgactcaattatgatagaaaagactccaacttgtgcagaaacagttaaaccagaaaac |
8726060 |
T |
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| Q |
213 |
tatgcaagcttaaggtttatagagtttatgagattt |
248 |
Q |
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| T |
8726059 |
tgtgcaagcttagggtttctagagtttatgagattt |
8726024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 26884265 - 26884323
Alignment:
| Q |
182 |
aacttgtgcagaaacagttaaaccagaaaactatgcaagcttaaggtttatagagttta |
240 |
Q |
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| T |
26884265 |
aacttgtgcaaaaacagttgaaacagaaaactgtgcaagcttaaggtttctagggttta |
26884323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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