View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15124_low_3 (Length: 460)
Name: NF15124_low_3
Description: NF15124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15124_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 4021065 - 4020635
Alignment:
| Q |
13 |
aatataacaattgtgtgctaattgagtattatcttttttaaatttcaatgaactttttgtctaatatgatttttctttcataaatatttggtgagaatta |
112 |
Q |
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| T |
4021065 |
aatataacaattgtgtgctaattgggtattatcttttttaaatttcaatgaactttttgtctaatatgatttttctttcataaatatttggtgagaatta |
4020966 |
T |
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| Q |
113 |
gcctcatccaatgcattcaaccatggatttttggatgtgtctgattctcagtgacaaatattgatttggaatgaccttattatgtaaaatttagtttggt |
212 |
Q |
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| T |
4020965 |
gcctcatccaatgcattcaaccatggatttttggatgtgtctgattctcagtgacaaatattgatttggaatgaccttattatgtaaaatttagtttggt |
4020866 |
T |
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| Q |
213 |
taaaagtgatttgaatgttaagtggt--aaatgatcggatacattagcatagaagtgacttgaacgataaattttagtgttaaaacacatcaacttctag |
310 |
Q |
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| T |
4020865 |
taaaagtgatttgaatgttaagtggtaaaaatgatcggatacattagcatagaagtgacttgaacgataaattttagtgttaaaacacatcaacttctag |
4020766 |
T |
|
| Q |
311 |
gatttaatttggacaccttagccacttgacccatcaacnnnnnnnnnnnngtttcaaagagcatagtggtgaaattcacactcactatacacggagaaga |
410 |
Q |
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| T |
4020765 |
gatttaatttggacaccttagccacttgacccatcaac---tttttttttgtttcaaagagcatagtggtgaaattcacactcactaaacacggagaaga |
4020669 |
T |
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| Q |
411 |
gggatttgcgggttagccacttagtgcagattat |
444 |
Q |
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| T |
4020668 |
gggatttgcgggttagccacttagtgcagattat |
4020635 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 32051445 - 32051409
Alignment:
| Q |
191 |
attatgtaaaatttagtttggttaaaagtgatttgaa |
227 |
Q |
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| T |
32051445 |
attatgtaaaatttattgtggttaaaagtgatttgaa |
32051409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 41115014 - 41115086
Alignment:
| Q |
223 |
ttgaatgttaagtggtaaatgatcggatacattagcatagaagtgacttgaacgataaattttagtgttaaaa |
295 |
Q |
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| T |
41115014 |
ttgaatgttaagtggtttatgtttggatacatttgcataaaagtgacttaaacaataagtttcagtgtaaaaa |
41115086 |
T |
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