View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15124_low_8 (Length: 330)

Name: NF15124_low_8

Description: NF15124

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15124_low_8

[»] chr3 (2 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 84; E-Value: 7e-40

Query Start/End: Original strand, 15 - 102

Target Start/End: Original strand, 8089889 - 8089976

Alignment:

Q	15	cataggcatgatgaaggatattggatttcaagcttataggttttccatttcttggtcccgaatattacctagtgagaaactgattaag	102	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	8089889	cataggcatgatgaaggatattggatttcaagcttataggttttccatttcttggtcccgaatattacctagtgagaaattgattaag	8089976	T

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Target: chr3; HSP #2

Raw Score: 64; E-Value: 6e-28

Query Start/End: Original strand, 213 - 311

Target Start/End: Original strand, 8090087 - 8090186

Alignment:

Q	213	actctgcatataaattaatgggtgaatttaatatcattgcatatatgtaac-nnnnnnnntgacaatgaacatataataagacatgtctagttccggcct	311	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8090087	actctgcatataaattaatgggtgaatttaatatcattgcatatatgtaacaaaaaaaaaagacaatgaacatataataagacatgtctagttccggcct	8090186	T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 39; E-Value: 0.0000000000005

Query Start/End: Original strand, 21 - 95

Target Start/End: Original strand, 7729356 - 7729430

Alignment:

Q	21	catgatgaaggatattggatttcaagcttataggttttccatttcttggtcccgaatattacctagtgagaaact	95	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	7729356	catgatgaaggatattggatttaatgcttataggttttcgatctcttggtccagattactacctcgtgagtaact	7729430	T

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