View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15125_high_1 (Length: 647)
Name: NF15125_high_1
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15125_high_1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Original strand, 39132793 - 39133439
Alignment:
| Q |
1 |
cgttcatggttatgggaagattaccagacttgtgaatcagttgttaagagatggcgttgtatggaataaggaaatgcaggcagcatttgaaaacaggtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132793 |
cgttcatggttatgggaagattaccagacttgtgaatcagttgttaggagatggcgttgtatggaataaggaaatgcaggcagcatttgaaaacaggtca |
39132892 |
T |
|
| Q |
101 |
aaaatatannnnnnncccaaccaatgtttgaatgtcattattatttattagtcctatttgaaagaaggcatggctctatgcagttgtgtagtgctattta |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132893 |
aaaatatatttttttcccaaccaatgtttgaatgccattattatttattagtcctatttgaaagaaggcatggctctatgcagttgtgtagtgctattta |
39132992 |
T |
|
| Q |
201 |
gtatttactctctaagcatcttttcaatttaataatgaactatgtgaccagttcaggtaggcagatactttttgcccttgtttttatgtagtcctttgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39132993 |
gtatttactctctaagcatcttttcaatttaataatgaactatgtgactagttcaggtaggcaggtactttttgcccttgtttttatgtagtcctttgtg |
39133092 |
T |
|
| Q |
301 |
tataacaataatatttagattacattttggagcaatggagttgatactgctatagggttaattagtgttccgactatcacaagtttctccactatgttgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39133093 |
tataacaataatatttagattacattttggagcaatggagccgataatgctatagggttaattagtgttccggctatcacaagtttctccactatgttgc |
39133192 |
T |
|
| Q |
401 |
ttattcccggacctaatttttaataatgatgagcttcccttaactcagctatctacagttgcagcagtgcaagagaagtacatgaaggatgatgaaaata |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39133193 |
ttattcccggacctaatttttaataatgatgagcttcccttaactcagctatctacagttgcagcagtgcaagagaagtacatgaaggatgatgaaaata |
39133292 |
T |
|
| Q |
501 |
ttgatgatgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttcattcatgttaagttgcatttgt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39133293 |
ttgatgatgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttcattcatgttaagttgcatttgt |
39133392 |
T |
|
| Q |
601 |
gttttgtacttctgcttctgtaagttctgaaaccaatgtgaacatta |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39133393 |
gttttgtacttctgcttctgtaagttctgaaaccaatgtgaacatta |
39133439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 409 - 608
Target Start/End: Original strand, 26059346 - 26059542
Alignment:
| Q |
409 |
ggacctaatttttaataatgatgagcttcccttaactcagctatctacagttgcagcagtgcaagagaagtacatgaaggatgatgaaaatattgatgat |
508 |
Q |
| |
|
|||| |||||||||| || |||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
26059346 |
ggacataatttttaaaaacgatgagtttcccttaactcagcaatctacagttgcagaagtgcaagagaaatacataaaggatgatgaaaatat---tgat |
26059442 |
T |
|
| Q |
509 |
gattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttca-ttcatgttaagttgcatttgtgttttgt |
607 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||||||||| || || |||||| |||||||||||||||| ||| | ||||||||| |||||||||||| |
|
|
| T |
26059443 |
gattgatgtggaaatgcttattatttt-tggcagcagtgcaggggaacgaccacttggtaattttacttcatttcttattaagttgcttttgtgttttgt |
26059541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 26058998 - 26059057
Alignment:
| Q |
19 |
gattaccagacttgtgaatcagttgttaagagatggcgttgtatggaataaggaaatgca |
78 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||| |||||||||||||||| ||||| |
|
|
| T |
26058998 |
gattaccagactcgtgaatcagttgttaaaaggtggctttgtatggaataaggacatgca |
26059057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 5371786 - 5371840
Alignment:
| Q |
34 |
gaatcagttgttaagagatggcgttgtatggaataaggaaatgcaggcagcattt |
88 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||| || ||||| |
|
|
| T |
5371786 |
gaatcagttgttaaaagatggctttggatggaataaggaaatgcagccaccattt |
5371840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University