View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15125_high_2 (Length: 586)

Name: NF15125_high_2
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15125_high_2
NF15125_high_2
[»] chr2 (5 HSPs)
chr2 (8-568)||(28341566-28342153)
chr2 (225-290)||(37402058-37402124)
chr2 (225-269)||(12668419-12668463)
chr2 (226-265)||(31026715-31026754)
chr2 (226-274)||(44776619-44776667)
[»] chr5 (5 HSPs)
chr5 (225-291)||(38749537-38749603)
chr5 (226-271)||(30098346-30098391)
chr5 (226-269)||(22423808-22423851)
chr5 (226-274)||(41558645-41558693)
chr5 (226-274)||(43208265-43208313)
[»] chr3 (3 HSPs)
chr3 (223-296)||(7948976-7949049)
chr3 (223-291)||(27513636-27513704)
chr3 (225-268)||(39002051-39002094)
[»] chr7 (5 HSPs)
chr7 (225-290)||(17257964-17258029)
chr7 (226-265)||(3554506-3554545)
chr7 (225-291)||(32093994-32094060)
chr7 (243-296)||(21138965-21139018)
chr7 (226-270)||(19930936-19930980)
[»] scaffold0126 (1 HSPs)
scaffold0126 (225-271)||(19163-19209)
[»] scaffold0110 (1 HSPs)
scaffold0110 (233-275)||(28877-28919)
[»] chr1 (5 HSPs)
chr1 (225-291)||(1486683-1486749)
chr1 (226-271)||(6427370-6427415)
chr1 (225-269)||(5944302-5944346)
chr1 (226-258)||(40747780-40747812)
chr1 (226-270)||(46914034-46914078)
[»] scaffold0171 (1 HSPs)
scaffold0171 (225-274)||(23439-23488)
[»] scaffold0004 (1 HSPs)
scaffold0004 (225-266)||(83179-83220)
[»] chr8 (4 HSPs)
chr8 (224-269)||(5307078-5307123)
chr8 (220-248)||(14229554-14229582)
chr8 (225-265)||(18170482-18170522)
chr8 (225-265)||(18634050-18634090)
[»] chr6 (4 HSPs)
chr6 (225-274)||(10770665-10770714)
chr6 (226-274)||(9024167-9024215)
chr6 (226-274)||(9025485-9025533)
chr6 (226-266)||(9617454-9617494)
[»] scaffold0022 (1 HSPs)
scaffold0022 (226-270)||(99913-99957)


Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 568
Target Start/End: Complemental strand, 28342153 - 28341566
Alignment:
Q  8 tgaaatgaagttacgcatgtgttcaatgaattttctgttttctttctctcatcctaatttttatgt--------------------cactttcaatatca 87  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||                    |||| |||||||||    
T  28342153 tgaaatgaagttacccatgtgttcaatgaattttctgttttctttctctcatcgtaatttttatgttttttttcttctttttatgtcactgtcaatatca 28342054  T
Q  88 tataatttatatgcaattcttcagattgttattattatattagattgataaatgcgactttactatataactgtcattacttatgaaacacaggcaccaa 187  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  28342053 tatcatttatatgcaattcttcagattgttattattatattagattgataaatgcgactttactatataactgtcatcacttatgaatcacaggcaccaa 28341954  T
Q  188 taccggatacgacacgg-------gacattggtactgatctaagaaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatat 280  Q
    |||||||||||||||||       |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28341953 taccggatacgacacggacacgttgacactgatactgatctgagaaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtctgacatgatat 28341854  T
Q  281 gtatccgacactaggataagtttaatccaagaaatatatgtgcttcatggtacatcacaatcatattgtacatttatttcttaaacaaaaaatcatgttg 380  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341853 gtatccgtcactaggatacgtttaatccaagaaatatatgtgcttcatggtacatcacaatcatattgtacatttatttcttaaacaaaaaatcatgttg 28341754  T
Q  381 tacatttatgtgcattgacggtgaatttgacgtaatcacgactgatgatgtgttattgtgatttcgacgaaaactacaatttaaagttgtattaagaaga 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28341753 tacatttatgtgcattgacggtgaatttgacgtaatcacgactgatgatgtgttattgtgatttcgacgaaaactacaatttaaagttgtattaagaaga 28341654  T
Q  481 agaaaaaactcaccactaatccaaagatgtatataaccgtaannnnnnnnaattatttttgtttgatggtattcctgaatcgtgattc 568  Q
    ||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||    
T  28341653 agaaaaaactcaccactaatccaaagatgtatataacagtaattttttttaattatttttgtttgatggtattcctgaatcgtgattc 28341566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 37402124 - 37402058
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtc-gtgtcagacatgatatgtatccgaca 290  Q
    |||||||||||||||||||||||| |||  |||| ||||| | ||||||||||||| ||||||||||    
T  37402124 aaaaatgacataattcaatgtaatcatatgtgtcagtgtctgcgtcagacatgataggtatccgaca 37402058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 12668463 - 12668419
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtc 269  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||    
T  12668463 aaaaatgacataattcagtgtaattataagtgtcggtgtcgtgtc 12668419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 31026715 - 31026754
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcg 265  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  31026715 aaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 44776619 - 44776667
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    |||||||||||| ||| |||||| ||| |||||||||||||||| ||||    
T  44776619 aaaatgacataactcagtgtaatcatatatgtcggtgtcgtgtcggaca 44776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 38749603 - 38749537
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgacac 291  Q
    ||||||||||||||||||||||||||||  ||| ||||| ||||| |||| ||||||||||| ||||    
T  38749603 aaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacacgatatgtatccaacac 38749537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 30098346 - 30098391
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcag 271  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||    
T  30098346 aaaatcacataattcaatgtaattatagatgtcggtatcgagtcag 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 22423851 - 22423808
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtc 269  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  22423851 aaaatcacataattcaatataattatatatgtcggtgtcgtgtc 22423808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 41558693 - 41558645
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    ||||||||||||||||||||||||| |  |||| |||||||||| ||||    
T  41558693 aaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggaca 41558645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 43208313 - 43208265
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    ||||||||||||||||||||||| |||  |||| |||| ||||||||||    
T  43208313 aaaatgacataattcaatgtaatcatatctgtctgtgttgtgtcagaca 43208265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 7948976 - 7949049
Alignment:
Q  223 agaaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgacactagga 296  Q
    ||||||||||||||||||||||||||| ||  |||| | |||||||| |||||||| ||||||| |||| ||||    
T  7948976 agaaaaatgacataattcaatgtaattgtatgtgtcagagtcgtgtcggacatgatttgtatccaacaccagga 7949049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 27513704 - 27513636
Alignment:
Q  223 agaaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgacac 291  Q
    ||||||||||||| |||||||||||| |||  |||||||||| |||| ||||  |||||||||| ||||    
T  27513704 agaaaaatgacattattcaatgtaatcatatgtgtcggtgtcttgtcggacacaatatgtatccaacac 27513636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 39002051 - 39002094
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgt 268  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||    
T  39002051 aaaaatcacataattcaatgtaattatatatgtcagtgtcgtgt 39002094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 17258029 - 17257964
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgaca 290  Q
    |||||| ||||||||||||||||| |||  |||||||||| ||||||||| |||| | ||||||||    
T  17258029 aaaaataacataattcaatgtaatcataagtgtcggtgtcatgtcagacacgatacgcatccgaca 17257964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 3554545 - 3554506
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcg 265  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  3554545 aaaattacataatttaatgtaattatagatgtcggtgtcg 3554506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 32094060 - 32093994
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgacac 291  Q
    |||||| |||||||||| |||||||| | |||||||||||||||| |||| || | || ||||||||    
T  32094060 aaaaatcacataattcagtgtaattacaaatgtcggtgtcgtgtcggacacgacacgtgtccgacac 32093994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 21139018 - 21138965
Alignment:
Q  243 tgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgacactagga 296  Q
    ||||||||||  ||||||||||||||| ||||||||| || |||||||| ||||    
T  21139018 tgtaattatatgtgtcggtgtcgtgtcggacatgatacgtgtccgacaccagga 21138965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 19930980 - 19930936
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtca 270  Q
    |||||||||||||||||||||||||||  ||||| | ||||||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcgatatcgtgtca 19930936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 19163 - 19209
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcag 271  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||||||    
T  19163 aaaaatgacataattcagtgtgattaaaaatgtcggtgtcgtgtcag 19209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 28877 - 28919
Alignment:
Q  233 cataattcaatgtaattatagatgtcggtgtcgtgtcagacat 275  Q
    ||||||||||||||||||||  ||||||||| |||||||||||    
T  28877 cataattcaatgtaattatatgtgtcggtgttgtgtcagacat 28919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 1486749 - 1486683
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagacatgatatgtatccgacac 291  Q
    |||||| |||||||||| ||||||||||  ||||||||||||||| |||| || | || ||||||||    
T  1486749 aaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacgacacgtgtccgacac 1486683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 6427370 - 6427415
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcag 271  Q
    ||||| |||||||||||||||||||||  ||| |||||||||||||    
T  6427370 aaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcag 6427415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 5944302 - 5944346
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtc 269  Q
    |||||| |||||||||| ||||||||||  |||||||||||||||    
T  5944302 aaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtc 5944346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 40747812 - 40747780
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtc 258  Q
    |||||||||||||||||||||||||||| ||||    
T  40747812 aaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 46914078 - 46914034
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtca 270  Q
    ||||| ||||||||||||||||||||| |||||||| || |||||    
T  46914078 aaaataacataattcaatgtaattataaatgtcggtatcatgtca 46914034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 23439 - 23488
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    |||||| |||||||||| ||||||||||  ||||||||||||||| ||||    
T  23439 aaaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcggaca 23488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 83179 - 83220
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgt 266  Q
    ||||||||||||||||| |||||||| | |||||||||||||    
T  83179 aaaaatgacataattcagtgtaattacaaatgtcggtgtcgt 83220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 5307078 - 5307123
Alignment:
Q  224 gaaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtc 269  Q
    ||||||||||||||||||||| ||| |||  |||||||||||||||    
T  5307078 gaaaaatgacataattcaatgaaatcataagtgtcggtgtcgtgtc 5307123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 14229554 - 14229582
Alignment:
Q  220 ctaagaaaaatgacataattcaatgtaat 248  Q
    |||||||||||||||||||||||||||||    
T  14229554 ctaagaaaaatgacataattcaatgtaat 14229582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 18170522 - 18170482
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcg 265  Q
    |||||| ||||||||||||||||||| | ||||||||||||    
T  18170522 aaaaattacataattcaatgtaattacaaatgtcggtgtcg 18170482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 18634090 - 18634050
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcg 265  Q
    |||||| ||||||||||||||||||| | ||||||||||||    
T  18634090 aaaaattacataattcaatgtaattacaaatgtcggtgtcg 18634050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 10770714 - 10770665
Alignment:
Q  225 aaaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    |||||| |||||||||| |||||||| |  ||||||||||||||||||||    
T  10770714 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcagaca 10770665  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 9024215 - 9024167
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    ||||||||||||||||||||||| |||  |||| |||||||||| ||||    
T  9024215 aaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggaca 9024167  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 9025533 - 9025485
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtcagaca 274  Q
    ||||| |||||||||| ||||||||||  ||||||||||||||| ||||    
T  9025533 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccgaca 9025485  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgt 266  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 99913 - 99957
Alignment:
Q  226 aaaatgacataattcaatgtaattatagatgtcggtgtcgtgtca 270  Q
    ||||| |||||||||||||||||||||  ||| ||||||||||||    
T  99913 aaaataacataattcaatgtaattatatgtgttggtgtcgtgtca 99957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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