View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15125_high_5 (Length: 288)

Name: NF15125_high_5
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15125_high_5
NF15125_high_5
[»] chr3 (16 HSPs)
chr3 (1-144)||(8647489-8647631)
chr3 (172-281)||(51976761-51976871)
chr3 (172-281)||(36684906-36685016)
chr3 (172-281)||(8705713-8705823)
chr3 (172-281)||(9057600-9057710)
chr3 (172-281)||(45736467-45736577)
chr3 (172-278)||(4978417-4978524)
chr3 (175-248)||(38998911-38998984)
chr3 (175-281)||(37796609-37796716)
chr3 (175-238)||(20916413-20916476)
chr3 (175-238)||(20925375-20925438)
chr3 (191-281)||(47165345-47165436)
chr3 (172-244)||(49758956-49759028)
chr3 (182-239)||(32073607-32073664)
chr3 (176-238)||(10346527-10346589)
chr3 (176-237)||(27265803-27265864)
[»] chr5 (7 HSPs)
chr5 (172-281)||(41197356-41197466)
chr5 (172-281)||(30376427-30376537)
chr5 (177-281)||(36779403-36779507)
chr5 (175-280)||(34905579-34905685)
chr5 (230-281)||(12378608-12378660)
chr5 (178-272)||(29985435-29985530)
chr5 (175-228)||(34525-34578)
[»] chr2 (4 HSPs)
chr2 (172-281)||(29894321-29894431)
chr2 (172-281)||(24543214-24543324)
chr2 (174-281)||(36365043-36365151)
chr2 (175-231)||(12555410-12555466)
[»] chr1 (15 HSPs)
chr1 (172-281)||(11351597-11351707)
chr1 (172-281)||(21515206-21515314)
chr1 (175-274)||(2536489-2536589)
chr1 (174-281)||(6784281-6784389)
chr1 (175-281)||(44839857-44839964)
chr1 (172-240)||(20639591-20639659)
chr1 (176-238)||(3601265-3601327)
chr1 (175-248)||(51080706-51080779)
chr1 (176-238)||(2114361-2114423)
chr1 (201-281)||(32988886-32988965)
chr1 (177-262)||(39648376-39648462)
chr1 (176-238)||(17321880-17321942)
chr1 (182-239)||(26418788-26418845)
chr1 (182-239)||(32108435-32108492)
chr1 (176-238)||(12539121-12539183)
[»] chr4 (13 HSPs)
chr4 (174-281)||(43989258-43989366)
chr4 (175-281)||(19315890-19315997)
chr4 (175-276)||(1394129-1394232)
chr4 (189-281)||(43813171-43813264)
chr4 (172-218)||(5124644-5124690)
chr4 (176-238)||(9633063-9633125)
chr4 (176-238)||(35096913-35096975)
chr4 (182-239)||(13200849-13200906)
chr4 (182-239)||(47783000-47783057)
chr4 (176-211)||(17283592-17283627)
chr4 (176-238)||(1479275-1479337)
chr4 (176-238)||(6969614-6969676)
chr4 (184-236)||(1311155-1311207)
[»] chr8 (5 HSPs)
chr8 (172-281)||(18481234-18481344)
chr8 (175-281)||(26440810-26440917)
chr8 (175-281)||(7251110-7251217)
chr8 (175-248)||(11911398-11911471)
chr8 (172-248)||(32536160-32536236)
[»] chr7 (8 HSPs)
chr7 (172-281)||(23820524-23820634)
chr7 (175-281)||(21118399-21118505)
chr7 (195-281)||(24808771-24808855)
chr7 (179-283)||(40901803-40901908)
chr7 (176-231)||(12980735-12980790)
chr7 (180-238)||(20492489-20492547)
chr7 (182-239)||(29526837-29526894)
chr7 (182-238)||(10325110-10325166)
[»] chr6 (6 HSPs)
chr6 (175-281)||(4513076-4513183)
chr6 (172-281)||(942694-942804)
chr6 (176-248)||(19047092-19047164)
chr6 (176-279)||(13757503-13757607)
chr6 (182-239)||(15950809-15950866)
chr6 (175-281)||(12125820-12125927)
[»] scaffold0041 (1 HSPs)
scaffold0041 (179-283)||(48110-48215)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 8647489 - 8647631
Alignment:
Q  1 atttaagttaggacactagaagctactccttctgtattttattataagtcgttttattttccaatatttgttgtatatggnnnnnnnngtttaaaacttg 100  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  8647489 atttaagttgggacactagaagctactccttccgtattttattataagtcgttttattttccaatatttgttgtatatgg-aaaaaaagtttaaaacttg 8647587  T
Q  101 ttatattcacaaatcacaatttagtgttaacatttaaaagaacc 144  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  8647588 ttatattcacaattcacaatttagtgttaacatttaaaagaacc 8647631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 51976761 - 51976871
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  51976761 taattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctccatctcatgctagctcccacgtt 51976860  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  51976861 tatgatgatgt 51976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 36684906 - 36685016
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  36684906 taattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccccatctcatgctagctctcacgtt 36685005  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  36685006 tatgatgatgt 36685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 8705713 - 8705823
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||    
T  8705713 taattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtt 8705812  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  8705813 tatgatgatgt 8705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 9057600 - 9057710
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| |||||||||| ||||||||||||||    
T  9057600 taattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatctcatactagctcccacgtt 9057699  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  9057700 tatgatgatgt 9057710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 45736467 - 45736577
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 270  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||| |  |||||   ||||||||||||||||| |||||||||||| ||||||||||    
T  45736467 taattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgctaactcccacgtt 45736566  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  45736567 tatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 4978524 - 4978417
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 270  Q
    |||||||||||||||| |||||||||| |||| ||| |||||||||||||||| ||| ||||||||||| |||||| |||||||||||| ||| | | ||    
T  4978524 taattttcagaactctcatgtcgagtttaatatgagacaagccaatgaggtcgttcatgaattagctagcgtagccacatctcatgctaactcgcgcatt 4978425  T
Q  271 tatgatga 278  Q
    ||||||||    
T  4978424 tatgatga 4978417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 38998911 - 38998984
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 248  Q
    |||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  38998911 ttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctcacgaattagcgagggtagccc 38998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 37796609 - 37796716
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    |||||| ||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||| || ||||| ||  | |||||    
T  37796609 ttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctcacaaattagcgagggtagccccatctgatcctagccccaccatttat 37796708  T
Q  274 gatgatgt 281  Q
    ||||||||    
T  37796709 gatgatgt 37796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 20916413 - 20916476
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||||    
T  20916413 ttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagct 20916476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 20925375 - 20925438
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||| ||||||    
T  20925375 ttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctcccgagttagct 20925438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 47165436 - 47165345
Alignment:
Q  191 gtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 281  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||  | || || ||||||||||||||||||||||||||| | ||||||    
T  47165436 gtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattaggaaaggcagccccatctcatgctagctcccacgtttacggtgatgt 47165345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 49759028 - 49758956
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggta 244  Q
    |||||||||||||||| |||||| |||||||||||||||||| |||| | ||||||| |||||  ||||||||    
T  49759028 taattttcagaactcttatgtcgggttcaataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 32073664 - 32073607
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  32073664 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 10346589 - 10346527
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||  |||| |||||||| ||||||||||| |||  |||||||||||| ||||||    
T  10346589 tttcagaactcgcatgtagagttcaacaggaggcaagcgaatagggtcgctcacgagttagct 10346527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 27265803 - 27265864
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagc 237  Q
    ||||| |||||| |||| ||||| |||| ||| ||| | |||||||||||||||||||||||    
T  27265803 tttcaaaactctcatgttgagtttaataagagacaaactaatgaggtcgctcacgaattagc 27265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 41197466 - 41197356
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  41197466 taattttcagaactcttatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 41197367  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  41197366 tatgatgatgt 41197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 30376537 - 30376427
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtt 270  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||| ||||||||||||||||| |||||    
T  30376537 taattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcatctcatgctagctccaacgtt 30376438  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  30376437 tatgatgatgt 30376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 281
Target Start/End: Complemental strand, 36779507 - 36779403
Alignment:
Q  177 ttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatga 275  Q
    ||||||||||| ||||||||| |||||||||||||||||||   ||| |||| | |||||||||||||| ||||||| ||| |||||||||||| |||||    
T  36779507 ttcagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtagtcccatct-atgttagctcccacgtctatga 36779409  T
Q  276 tgatgt 281  Q
    ||||||    
T  36779408 tgatgt 36779403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 280
Target Start/End: Original strand, 34905579 - 34905685
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgtttat 273  Q
    |||||||||||||  ||| |||||||||||||| ||| |||||||||||||||| ||||||||    ||||||| ||||||||||| |||||| |||||     
T  34905579 ttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcgctcatgaattagcccaagtagcccgatctcatgctaactcccaagtttac 34905678  T
Q  274 gatgatg 280  Q
    |||||||    
T  34905679 gatgatg 34905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 12378660 - 12378608
Alignment:
Q  230 gaattagctagggtagccc-atctcatgctagctcccacgtttatgatgatgt 281  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12378660 gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 12378608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 272
Target Start/End: Original strand, 29985435 - 29985530
Alignment:
Q  178 tcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgttta 272  Q
    |||||||||| |||||||||||||||| || ||||| |||||||||| |||||| ||||||  |||||||| |  ||||| |||||||||| ||||    
T  29985435 tcagaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcaggtagccctaggtcatgttagctcccacattta 29985530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 34525 - 34578
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctca 228  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||  |||||||||    
T  34525 ttttcagaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 29894431 - 29894321
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  29894431 taattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 29894332  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  29894331 tatgatgatgt 29894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 24543214 - 24543324
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  24543214 taattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 24543313  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  24543314 tatgatgatgt 24543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 36365043 - 36365151
Alignment:
Q  174 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgttta 272  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  36365043 attttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgttta 36365142  T
Q  273 tgatgatgt 281  Q
    || ||||||    
T  36365143 tggtgatgt 36365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 12555466 - 12555410
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacga 231  Q
    ||||||||||||| ||||| ||||||||||||||||||  |||| ||||||| ||||    
T  12555466 ttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgcttacga 12555410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 11351707 - 11351597
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  11351707 taattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagcttccacgtt 11351608  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  11351607 tatgatgatgt 11351597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 21515206 - 21515314
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  21515206 taattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtt 21515303  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  21515304 tatgatgatgt 21515314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 2536589 - 2536489
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||    
T  2536589 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcatgctagctcccatgtttat 2536490  T
Q  274 g 274  Q
    |    
T  2536489 g 2536489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 6784281 - 6784389
Alignment:
Q  174 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgttta 272  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| ||||||||| |||||| |||||||||    
T  6784281 attttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccatctcatactagcttccacgttta 6784380  T
Q  273 tgatgatgt 281  Q
    |||| ||||    
T  6784381 tgataatgt 6784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 44839964 - 44839857
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    ||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| || ||||||||||||| ||||||| ||||||||||| ||||||||    
T  44839964 ttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccccatctaatgctagctcctacgtttat 44839865  T
Q  274 gatgatgt 281  Q
    ||| ||||    
T  44839864 gataatgt 44839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 20639591 - 20639659
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctag 240  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||    
T  20639591 taattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 3601327 - 3601265
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  3601327 tttcagaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct 3601265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 51080779 - 51080706
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 248  Q
    |||||| |||||| |||||||||| |||||||||||| | |||| ||||||||| |||||||| ||||||||||    
T  51080779 ttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcgctcatgaattagcgagggtagccc 51080706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 2114361 - 2114423
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| ||||||||||||| |||| | |||| |||| |||||||||||||||||||    
T  2114361 tttcagaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagct 2114423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 32988965 - 32988886
Alignment:
Q  201 ataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc-atctcatgctagctcccacgtttatgatgatgt 281  Q
    |||||||||||||||||    ||||||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||||    
T  32988965 ataggaggcaagccaattt--tcgctcatgaattagttagggtagccccatctcatgctagcttccgcgtttatgatgatgt 32988886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 39648462 - 39648376
Alignment:
Q  177 ttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagct 262  Q
    |||||||||||  ||||||||| ||||| || ||||| ||| |||||||||| |||||||||  ||||| |||||||||||||||||    
T  39648462 ttcagaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcaggtagccccatctcatgctagct 39648376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 17321880 - 17321942
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| ||||||||||||| ||||||||||| |||  ||| |||||||| ||||||    
T  17321880 tttcagaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagct 17321942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 26418845 - 26418788
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  26418845 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 26418788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 32108435 - 32108492
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  32108435 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 12539121 - 12539183
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| ||||||||||||| ||||||||||| |||  | | |||||||| ||||||    
T  12539121 tttcagaactctcatgtcgagttcaacaggaggcaagcaaataggatagctcacgagttagct 12539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 43989366 - 43989258
Alignment:
Q  174 attttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgttta 272  Q
    ||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  43989366 atttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccccatctcatgctagctcccacgttta 43989267  T
Q  273 tgatgatgt 281  Q
    |||||||||    
T  43989266 tgatgatgt 43989258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Complemental strand, 19315997 - 19315890
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  |||| ||| ||||||||   ||||| |||| || ||| ||||||||||| ||||    
T  19315997 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggagtcgttcatgaattagcacaggtagccccaccttatggtagctcccacgcttat 19315898  T
Q  274 gatgatgt 281  Q
    ||| ||||    
T  19315897 gattatgt 19315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 1394129 - 1394232
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag--cccatctcatgctagctcccacgttta 272  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||| ||||||||    ||||  ||||||| |||||||||||||| | ||    
T  1394129 ttttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagcacaagtagtccccatctaatgctagctcccacatcta 1394228  T
Q  273 tgat 276  Q
    ||||    
T  1394229 tgat 1394232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 43813264 - 43813171
Alignment:
Q  189 atgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 281  Q
    |||||||||||||||| || |||| ||||| ||||| ||| ||||||| |||||||| |||||||||| ||||||| | ||||| |||||||||    
T  43813264 atgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgt 43813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 5124690 - 5124644
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatg 218  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  5124690 taattttcagaactctaatgtcgagttcaatcggaggcaagctaatg 5124644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 9633063 - 9633125
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| ||||||||||||||||||||||||  |||| ||||| | |||| ||||||    
T  9633063 tttcagaactctcatgtcgagttcaataggaggcaagtgaatggggtcgattacgagttagct 9633125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 35096913 - 35096975
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| |||||||||||||||| |||||||| |||  ||| |||||||| ||||||    
T  35096913 tttcagaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagct 35096975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 13200849 - 13200906
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||||| |||||||||||| |||||||| ||||| || |||||||    
T  13200849 aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagcta 13200906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 47783000 - 47783057
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  47783000 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 47783057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 211
Target Start/End: Complemental strand, 17283627 - 17283592
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaa 211  Q
    |||||||||||| |||||||||||||||||||||||    
T  17283627 tttcagaactcttatgtcgagttcaataggaggcaa 17283592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 1479337 - 1479275
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| || |||||||||||||||||||||  |||| |||| ||||| | ||||||    
T  1479337 tttcagaactctcatatcgagttcaataggaggcaagtaaatggggtcactcacaagttagct 1479275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 6969614 - 6969676
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||||||| ||||||| ||||||| |||| |||  |||| |||||||||||| ||||||    
T  6969614 tttcagaactctcatgtcgatttcaataagaggtaagtaaatggggtcgctcacgagttagct 6969676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 1311155 - 1311207
Alignment:
Q  184 ctctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattag 236  Q
    |||| |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  1311155 ctctcatgttgagtttaataggaggtaagtcaatgaggtcgctcacgagttag 1311207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 18481234 - 18481344
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||| |||| ||||  ||||||||||||||| |||||||||||||||||||||||||    
T  18481234 taattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccccatctcatgctagctcccacgtt 18481333  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  18481334 tatgatgatgt 18481344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 26440810 - 26440917
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||| ||||| || ||||||||||||| ||||||| |||||||||| |||| ||||    
T  26440810 tttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccccatctaatgctagctctcacgattat 26440909  T
Q  274 gatgatgt 281  Q
    ||| ||||    
T  26440910 gataatgt 26440917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 7251110 - 7251217
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| | || |||| | |||| ||| ||||| ||||||||||||||||| ||| | ||||    
T  7251110 ttttcagaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctcatgctagcttccatgattat 7251209  T
Q  274 gatgatgt 281  Q
    ||| ||||    
T  7251210 gataatgt 7251217  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 11911471 - 11911398
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 248  Q
    |||||| |||||| |||||||||||||||||||| || | |||| |||| | ||||| |||||| ||| |||||    
T  11911471 ttttcaaaactctcatgtcgagttcaataggaggtaaacgaatggggtcccccacgagttagctcgggaagccc 11911398  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 32536236 - 32536160
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 248  Q
    |||||||  ||||||| |||||||||||||| | |  ||||  |||| ||||||||  |||||||||||||||||||    
T  32536236 taattttatgaactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagccc 32536160  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 23820524 - 23820634
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtt 270  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||  ||||||||||||||||||||| ||    
T  23820524 taattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatccatctcatgctagctcccacatt 23820623  T
Q  271 tatgatgatgt 281  Q
    |||||||||||    
T  23820624 tatgatgatgt 23820634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 21118399 - 21118505
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttat 273  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |  |||||||||||||| ||||||  |||||||||| ||||||||    
T  21118399 ttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcaccatctattgctagctccaacgtttat 21118497  T
Q  274 gatgatgt 281  Q
    ||| ||||    
T  21118498 gataatgt 21118505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 24808855 - 24808771
Alignment:
Q  195 agttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttatgatgatgt 281  Q
    |||||||||||||||||||||||| || | |||| |||||||||||| ||| |||||||||||||||   ||||||||||||||||||    
T  24808855 agttcaataggaggcaagccaatggggccactcatgaattagctaggatagccccatctcatgctag---ccacgtttatgatgatgt 24808771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 40901908 - 40901803
Alignment:
Q  179 cagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatgatg 277  Q
    ||||||||| |||||||||| |||||||||||| | |||  ||||||||| |||||| |   |||||| ||||||||||||||||||||  | |||||||    
T  40901908 cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg 40901809  T
Q  278 atgtcc 283  Q
    ||||||    
T  40901808 atgtcc 40901803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 12980735 - 12980790
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacga 231  Q
    |||||||||||| ||||||||||||| ||||||||| | |||| ||||||||||||    
T  12980735 tttcagaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctcacga 12980790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 20492489 - 20492547
Alignment:
Q  180 agaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||||| || ||||||| |||||||||||||| |||  |||||||||||||||||||    
T  20492489 agaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagct 20492547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 29526837 - 29526894
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  29526837 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 29526894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 10325166 - 10325110
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagct 238  Q
    |||||| |||||||||| |||||||||||| | |||||||||||||| || ||||||    
T  10325166 aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttagct 10325110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 4513076 - 4513183
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtag-cccatctcatgctagctcccacgtttat 273  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||| |||||||||| ||||||    
T  4513076 ttttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctcccatgtttat 4513175  T
Q  274 gatgatgt 281  Q
    ||| ||||    
T  4513176 gataatgt 4513183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 942694 - 942804
Alignment:
Q  172 taattttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagg-gtagcccatctcatgctagctcccacgtt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||   | |||||||||||||| ||||||||||    
T  942694 taattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccccatctcatgctatctcccacgtt 942793  T
Q  271 tatgatgatgt 281  Q
    || ||||||||    
T  942794 tacgatgatgt 942804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 19047092 - 19047164
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagccc 248  Q
    ||||| |||||| |||||||||| |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  19047092 tttcaaaactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagcgagggtagccc 19047164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 13757607 - 13757503
Alignment:
Q  176 tttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatg 274  Q
    ||||| |||||| |||| ||||| |||| || |||| | ||||||||||||||||||||||||||| |||| |||| | || |||||||| |  ||||||    
T  13757607 tttcaaaactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagctaggatagctccatataatcctagctccaatttttatg 13757508  T
Q  275 atgat 279  Q
    |||||    
T  13757507 atgat 13757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 15950809 - 15950866
Alignment:
Q  182 aactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagcta 239  Q
    |||||| |||||||||| | |||||||||||| |||||||| ||||| ||||||||||    
T  15950809 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 15950866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 12125820 - 12125927
Alignment:
Q  175 ttttcagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagcc-catctcatgctagctcccacgtttat 273  Q
    ||||||||| ||| ||||  | ||||||| ||||||||| ||||| || ||||| ||||||||    |||||| ||||||||||||||| ||| || |||    
T  12125820 ttttcagaattctcatgttcaattcaatatgaggcaagctaatgaagtggctcatgaattagcacatgtagcctcatctcatgctagcttccatgtctat 12125919  T
Q  274 gatgatgt 281  Q
    ||||||||    
T  12125920 gatgatgt 12125927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 48110 - 48215
Alignment:
Q  179 cagaactctaatgtcgagttcaataggaggcaagccaatgaggtcgctcacgaattagctagggtagc-ccatctcatgctagctcccacgtttatgatg 277  Q
    ||||||||| |||||||||| |||||||||||| | |||  ||||||||| |||||| |   |||||| ||||||||||||||||||||  | |||||||    
T  48110 cagaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatg 48209  T
Q  278 atgtcc 283  Q
    ||||||    
T  48210 atgtcc 48215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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