View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15125_high_6 (Length: 288)
Name: NF15125_high_6
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15125_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 40505450 - 40505172
Alignment:
| Q |
1 |
tccacttgagtccttgaaacaatttctgtcctcggact-gttattctcttttcatacattatgctaataattagtgtttgtttacatagaccgttagatc |
99 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40505450 |
tccacttgagtccttgacacaatttctgtcctcggacttgttattctcttttcatacattatgctaataattagtgtttgtttacatagaccattagatc |
40505351 |
T |
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| Q |
100 |
gataaaatcacggtggttcaccactccaatgtgcaacttttgctaaaattacgttgactcgccatggttctgccaatctcaccgtcaatccaaacatgta |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
40505350 |
gataaaatcacggtagttcaccactccaatgtgcaacttttgctaaaattacgttgactcaccatggttctgtcaatctcaccgtcaatccaaacatgta |
40505251 |
T |
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| Q |
200 |
ctcggtggttctcaacttgctataaaacggccttggtgattgctatcatgtaacttgttgaaggttaatcaattttctt |
278 |
Q |
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| T |
40505250 |
cttggtggttctcaacttgctataaaaaggccttggtgattgctatcatgtaacttgttgaaggttaatcaattttctt |
40505172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 22137941 - 22137854
Alignment:
| Q |
1 |
tccacttgagtccttgaaacaatttctgtcctcggac-tgttattctcttttcatacattatgctaataattagtgtttgtttacatag |
88 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22137941 |
tccacttgagtccttgacacaatttctgtcctcggacttgttattctcttttcataca-tatgctaataattagtgtttgtttacatag |
22137854 |
T |
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