View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15125_high_7 (Length: 233)

Name: NF15125_high_7
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15125_high_7
NF15125_high_7
[»] chr4 (12 HSPs)
chr4 (1-218)||(3801539-3801756)
chr4 (3-218)||(4218598-4218813)
chr4 (1-218)||(4025179-4025396)
chr4 (1-218)||(4002252-4002469)
chr4 (22-209)||(4009970-4010157)
chr4 (139-207)||(3987086-3987154)
chr4 (140-216)||(3817676-3817752)
chr4 (140-216)||(3919712-3919788)
chr4 (140-216)||(3932936-3933012)
chr4 (1-60)||(3954519-3954578)
chr4 (140-218)||(3810108-3810186)
chr4 (139-218)||(3954378-3954457)
[»] chr5 (1 HSPs)
chr5 (1-218)||(13397903-13398120)
[»] scaffold1360 (1 HSPs)
scaffold1360 (180-216)||(1931-1967)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 3801539 - 3801756
Alignment:
Q  1 gccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttcttttaaaattgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3801539 gccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttctttttaaattgtt 3801638  T
Q  101 attccaccccatcctaattccgaactcacacttgacataaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtct 200  Q
    ||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  3801639 attccacgccttcctaattccaaactcacatttgacataaaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtct 3801738  T
Q  201 tgccaataccgcccatac 218  Q
    ||||||||||||||||||    
T  3801739 tgccaataccgcccatac 3801756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 4218598 - 4218813
Alignment:
Q  3 caatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttcttttaaaattgttat 102  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  4218598 caatccttctatgaatattattagacaacccatttgatgaatcgattttcacatcttcatttaataggttagaaaaaagcatttcttttaaaaatgttat 4218697  T
Q  103 tccaccccatcctaattccgaactcacacttgacataaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttg 202  Q
    |||||  | |  |||| || |||||||| ||||||||||||||||||||||||||||||| | | |||||| ||||| ||||||||||||||||||||||    
T  4218698 tccacgactttgtaatcccaaactcacatttgacataaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttg 4218797  T
Q  203 ccaataccgcccatac 218  Q
    ||||||||||||||||    
T  4218798 ccaataccgcccatac 4218813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4025179 - 4025396
Alignment:
Q  1 gccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttcttttaaaattgtt 100  Q
    |||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||   ||||||  |||||||||| |||||||| |||| ||||    
T  4025179 gccaatccttctctcaatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaaaaagtttttctttcaaaaatgtt 4025278  T
Q  101 attccaccccatcctaattccgaactcacacttgacataaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtct 200  Q
    ||||||   | |||||||||   ||| ||  ||| || |||||||||||| ||||||||||||| |||||| ||||| |||||||  |||||||||||||    
T  4025279 attccatgtcttcctaattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaaaatttcttcggcaatagttgtct 4025378  T
Q  201 tgccaataccgcccatac 218  Q
    |||||||||| |||||||    
T  4025379 tgccaatacctcccatac 4025396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4002252 - 4002469
Alignment:
Q  1 gccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttcttttaaaattgtt 100  Q
    ||||||| | || ||||||| |||||||| ||||||||||||||  ||||||||||||||   ||||||  |||||||||||||||||||||||| ||||    
T  4002252 gccaatcatcctctgaatataattagacagcccatttggtgaattaattttcacatcttctgctaatagtgtagaaaaaagcttttcttttaaaaatgtt 4002351  T
Q  101 attccaccccatcctaattccgaactcacacttgacataaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtct 200  Q
    ||||||  || |||| ||||   ||| ||  ||  || ||||||| |||| ||||||||||||| | || ||||||| | |||||  |||||||||||||    
T  4002352 attccatgccttcctgattcttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaacttcggttaaaaacttcttcagcaatagttgtct 4002451  T
Q  201 tgccaataccgcccatac 218  Q
    |||||||||| |||||||    
T  4002452 tgccaatacctcccatac 4002469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 4009970 - 4010157
Alignment:
Q  22 attagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttcttttaaaattgttattccaccccatcctaattcc 121  Q
    |||||||||||||||||| |||  |||||||||||||||   ||||||  |||||||||| |||||||| |||| |||| |||||   | |||||||| |    
T  4009970 attagacaacccatttggcgaacggattttcacatcttctgctaatagtgtagaaaaaagtttttctttcaaaaatgttcttccatgtcttcctaattgc 4010069  T
Q  122 gaactcacacttgacataaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaatac 209  Q
       || ||  ||  || |||||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||    
T  4010070 tcgcttaccttttccaaaaaacaacaaccttcatattcagagcaattttggttaaaaatttctcctgcaatagttgtcttgccaatac 4010157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 3987086 - 3987154
Alignment:
Q  139 aaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaat 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  3987086 aaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaat 3987154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 3817676 - 3817752
Alignment:
Q  140 aaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaataccgcccat 216  Q
    ||||||||||||||||| || || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3817676 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccat 3817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 3919788 - 3919712
Alignment:
Q  140 aaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaataccgcccat 216  Q
    ||||||||||||||||| || || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3919788 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccat 3919712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 3933012 - 3932936
Alignment:
Q  140 aaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaataccgcccat 216  Q
    ||||||||||||||||| || || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3933012 aaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccat 3932936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3954578 - 3954519
Alignment:
Q  1 gccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttc 60  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3954578 gccaatccttctctgaatattattagacaacccatttggtgaatcgattttcacatcttc 3954519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 3810108 - 3810186
Alignment:
Q  140 aaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaataccgcccatac 218  Q
    ||||||||||||||||||||||| | | |||||| ||||| |||||||||||||||||||||||||||||| |||||||    
T  3810108 aaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccacccatac 3810186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 3954457 - 3954378
Alignment:
Q  139 aaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtcttgccaataccgcccatac 218  Q
    |||||||||||| ||||||||||||| | || ||||| | | |||||  ||||||||||||||||||||||| |||||||    
T  3954457 aaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagcaatagttgtcttgccaatacctcccatac 3954378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13397903 - 13398120
Alignment:
Q  1 gccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaagcttttcttttaaaattgtt 100  Q
    |||||||||||| ||||||| | ||| ||||||||||| |||||||||||| ||||||||   ||||||  |||||| |||||||||||||||||  | |    
T  13397903 gccaatccttctctgaatataactaggcaacccatttgatgaatcgatttttacatcttctgctaatagtgtagaaacaagcttttcttttaaaaacgct 13398002  T
Q  101 attccaccccatcctaattccgaactcacacttgacataaaacaacaaccatcatattcagagcgattttggttaaatatttcttttgcaatagttgtct 200  Q
    ||||||  || |||||||||   ||||||  ||| || ||||||||| || ||||||||||| | | |||| ||||| |||||||  |||||||||||||    
T  13398003 attccatgccttcctaattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaaaatttcttcggcaatagttgtct 13398102  T
Q  201 tgccaataccgcccatac 218  Q
    | |||||||| |||||||    
T  13398103 ttccaatacctcccatac 13398120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1360 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 1967 - 1931
Alignment:
Q  180 tttcttttgcaatagttgtcttgccaataccgcccat 216  Q
    |||||| ||||||||||||||||||||||||||||||    
T  1967 tttcttctgcaatagttgtcttgccaataccgcccat 1931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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