View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15125_low_3 (Length: 550)
Name: NF15125_low_3
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15125_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 10 - 531
Target Start/End: Complemental strand, 755913 - 755396
Alignment:
| Q |
10 |
attattctgcatcactgataaacatagtgaaatttgcatttctctcaccatcaatctctttatagtacgtgaacccaaacatacatttgccttacttttc |
109 |
Q |
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| T |
755913 |
attatcctgcatcactgataaatatagtgaaatttgcatttctctcctcatcaatctctttaaa-tacatgaacccaaacatacaattgccttacttttc |
755815 |
T |
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| Q |
110 |
aaccatattaaattttttaaggattaaaatatttaaacaa--gatccatatagctaacttcacctagcagaaaaagggtttcatagctattgttatttta |
207 |
Q |
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| T |
755814 |
aaccatattaaatttttcaaggattaaaagattcaaacaaaagatccatatagccaacttcacctagcggaaaaagggtttcgtagttattgttgttata |
755715 |
T |
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| Q |
208 |
taattacattttgaacaaaatattcccagcgattgacgattttaattacggatattcaaggatgttgagaagtctccccaaagcaagagcaagaatttat |
307 |
Q |
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| T |
755714 |
tactgt-attttgaaccaaatattcccagttattgacaattttaattttggaaattca-ggatgttgagaagaatctccaaatcgagggctagaattcat |
755617 |
T |
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| Q |
308 |
agaagtggaagtataataaaataaattcaggacattgttatgttacccaaatccaaagtttgaattgatagaaactgtaattcagtaaatggcttgaaag |
407 |
Q |
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| T |
755616 |
agacgtggcagtttaataaaataagctcaggac---gttatgttacccaaatccaaagtttgaattgatagaagctgtaattcagtaaatggcatgaaag |
755520 |
T |
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| Q |
408 |
gacttggacgtaacacagctcaggcatacaatatgtcaaatacttcagaaataaagacgcagcaccttcgaatgcccccgagagacatgcctgcaacagc |
507 |
Q |
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| T |
755519 |
gacttggacgtaacacagctcaggcatacaatatgtcaaatacttcagaaataaagatgcagcaccttcgaatgcccccgagagacatgcctgcaacagc |
755420 |
T |
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| Q |
508 |
ctcttcaaaagctggtattacctg |
531 |
Q |
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| T |
755419 |
ctcttcaaaagctggtattacctg |
755396 |
T |
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