View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15125_low_5 (Length: 318)
Name: NF15125_low_5
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15125_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 17913944 - 17914231
Alignment:
| Q |
24 |
aaactttgaaaaccctaatcatatatataccttccttattcgcgcttctctcttactctcttcttcatagcaaattctcccttctcctagttaatccctc |
123 |
Q |
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| T |
17913944 |
aaactttgaaaaccctaatcatata----ccttccttgttcgcgcttctctcttactctcgtc---atagcaaattctcccttctcctagttaatccctc |
17914036 |
T |
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| Q |
124 |
cgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaactacattctcatgtttac |
223 |
Q |
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| T |
17914037 |
cgccatgtctcctcagcaacctatccgtgttgatccaaaaatctggcagtgctgcgccggcgctgccgttaaaattccaaaactaaattctcatgtttac |
17914136 |
T |
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| Q |
224 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcaccctctcccttcttgatcgttcccgtcaattcattccgtgcac |
318 |
Q |
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| T |
17914137 |
tacttcccattagggcacttagaacacgtctctccatccccaaaccctagcacactctcccttcttgaccgttcccgtcaattcattccctgcac |
17914231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 17977139 - 17976938
Alignment:
| Q |
107 |
ctcctagttaatccctccgccatgtctcctcagcaacctatctgtgttgatccaaaaatctggcagtgctgcgccggcgctgctgttaaaattccaaaac |
206 |
Q |
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||||| ||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||| || ||| | | |||||||||||||||| |
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| T |
17977139 |
ctccttgttaatctctccgccatgtcttctcagcaacg---ccgtgttgatcagaaaatctggcagtgctgtgcaggcagttccgttaaaattccaaaac |
17977043 |
T |
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| Q |
207 |
tacattctcatgtttactacttcccattagggcacttagaacacgtctctccatccccaaaccctagcaccctctcccttcttgatcgttcccgtcaatt |
306 |
Q |
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| T |
17977042 |
tatattctcatgtttactacttcccattagggcacttagaacacatatgtccatccccaaaccctaacacactgtcccatcttgaccgttcccgtccatt |
17976943 |
T |
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| Q |
307 |
cattc |
311 |
Q |
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| T |
17976942 |
cattc |
17976938 |
T |
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