View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15125_low_8 (Length: 259)
Name: NF15125_low_8
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15125_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 5052010 - 5051752
Alignment:
| Q |
1 |
tcccctcaatcttctcctcgtgattggggccgggatcaatcaagtcagcaataatacataatttaacagttgggcaaagggctatcataattgttcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5052010 |
tcccctcaatcttctcctcgtgatcggggccgggatcaatcaagtcagcaacaatacataatttgacagttgggcaaagggctatcataattgttcaact |
5051911 |
T |
|
| Q |
101 |
aagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaacttat |
200 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051910 |
aagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaacttat |
5051811 |
T |
|
| Q |
201 |
cagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgca |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5051810 |
cagatgatatatggatggagatatggagtcgtgtccatacaagacaggagtgagatgca |
5051752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 51273452 - 51273617
Alignment:
| Q |
96 |
caactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggaga |
194 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
51273452 |
caaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggaga |
51273551 |
T |
|
| Q |
195 |
acttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgca |
259 |
Q |
| |
|
| |||||||||||| ||| ||| |||||||||||||||| | | |||||||||| |||||| |||| |
|
|
| T |
51273552 |
atttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgca |
51273617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 14907599 - 14907668
Alignment:
| Q |
165 |
tagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtgt |
234 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| ||||| |||||| |
|
|
| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgt |
14907668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University