View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15125_low_9 (Length: 243)
Name: NF15125_low_9
Description: NF15125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15125_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 17914259 - 17914487
Alignment:
| Q |
1 |
ccctgttcccgaggaggtgttcgtaaaattccttcccactcctggtattaacaactgtgtccacgaccctctt---gaggttcgtgaagaccaacatgac |
97 |
Q |
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| T |
17914259 |
ccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaataactgtgtccacgaacctcctcctgaggttcgtgaagaccaacatgac |
17914358 |
T |
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| Q |
98 |
ggggttgaggttgtttcctctggaaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgcctagcgaatgcgaaaaattaatcttcc |
197 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17914359 |
ggggttaaggttgtttcctctggcaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgcctagcgaatgcgcaaaattaatcttcc |
17914458 |
T |
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| Q |
198 |
cgccacttgacctccaggccgaaaagcct |
226 |
Q |
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| T |
17914459 |
cgccacttgacctccaggccgaaaagcct |
17914487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 17976761 - 17976687
Alignment:
| Q |
137 |
tctgatgctaataacggcggtgcattctcagtgcctagcgaatgcgaaaaattaatcttcccgccacttgacctc |
211 |
Q |
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| T |
17976761 |
tctgatgctaacaatggcggtgcattctctgtgccagtggaatgcgcgaaattaatcttcccgccacttgacctc |
17976687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 35273321 - 35273423
Alignment:
| Q |
108 |
ttgtttcctctggaaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgcctagcgaatgcgaaaaattaatcttcccgccacttga |
207 |
Q |
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| T |
35273321 |
ttgttttctctggcaagactctcacccagtcggatgctaataatggcggtgcattctccgtaccttctgaatgcgcgaaattgatattcccgccacttga |
35273420 |
T |
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| Q |
208 |
cct |
210 |
Q |
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||| |
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| T |
35273421 |
cct |
35273423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 8823289 - 8823381
Alignment:
| Q |
73 |
tgaggttcgtgaagaccaacatgacggggttgaggttgtttcctctggaaaaactctaactccgtctgatgctaataacggcggtgcattctc |
165 |
Q |
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||||||||| |||||| ||| | | || | |||| |||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||| |
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| T |
8823289 |
tgaggttcgggaagacgaacctaaaggtgatgagtttgtttcctctggaaagactctaaccctatctgatgctaataacggtggtgcattctc |
8823381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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