View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_11 (Length: 453)
Name: NF15126_high_11
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 42448265 - 42447839
Alignment:
| Q |
18 |
cctggaagtgtaggccaattgagagatgtctcttaatttttggctaaccatttatttcgaactgcataatttaggcatggtgtaaccattagaaccaagt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42448265 |
cctggatgtgtaggccaattgagagatgtctcttaatttt-ggctaaccatttttttcgaactgcataatttaggcatggtgtaactgttagaaccaagt |
42448167 |
T |
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| Q |
118 |
catattcagcgatcattgtcatgtatctagccttcattaatctaaatctactgatgtaattatctgacgatccatccttcttttctttgaattttggcta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42448166 |
catattcagcgatcattgtcatgtatctagccttcattaatctaaatctactgatgtaattatctaacgatccatccttcttttctttgaattttggcta |
42448067 |
T |
|
| Q |
218 |
aatccttccaatatgatcttttcgaatccctacatctctaatctggaaggatcctggtgggttatttctcatgatggtaatccatatggatatgtcgtgg |
317 |
Q |
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| T |
42448066 |
aatccttccaatatgatcttttcgaatccctacatctctaatctggaaggatcctggtaggttatttctcatgatggtaatccatatggatatgttgtgg |
42447967 |
T |
|
| Q |
318 |
aattcatcctttgggtttatggacttgcctcagaaccggtttcaatttgactataaacaggattcgaagttaattctccttgatgaataagatcaacatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42447966 |
aattcatcctttgggtttatggacttgcctcagaaccggtttcaatccgactataaacaggattcgaagttaattctccttgatgaataagatcaacatt |
42447867 |
T |
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| Q |
418 |
ctgaggcacatgaacctcatgttcatct |
445 |
Q |
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| T |
42447866 |
ctgaggcacatgaacctcatgttcatct |
42447839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 741671 - 741590
Alignment:
| Q |
173 |
gtaattatctgacgatccatccttcttttctttgaattttggctaaatccttccaatatgatcttttcgaatccctacatct |
254 |
Q |
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| T |
741671 |
gtaattatctaatgattcatccttcttttctttgaattttggctaaatccttccaatatgatctactcgaatccctacatct |
741590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 22769134 - 22769055
Alignment:
| Q |
129 |
atcattgtcatgtatctagccttcattaatctaaatctactgatgtaattatctgacgatccatccttcttttctttgaat |
209 |
Q |
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| T |
22769134 |
atcattgtcgttgatctagccttcatcaatctaaatctactgatgtaatcatctaatgattcat-catcttttctttgaat |
22769055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 23956020 - 23955901
Alignment:
| Q |
57 |
ttggctaaccattta-tttcgaactgcataatttaggcatggtgtaaccattagaaccaagtcatattcagcgatcattgtcatgtatctagccttcatt |
155 |
Q |
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|||||||||||||| ||||||||||||||||| ||| ||| || | ||||| |||||| |||| ||||| |||||||| || |||||||||| || |
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| T |
23956020 |
ttggctaaccattttctttcgaactgcataattaaggtatgttgcagccatttaaaccaattcatgttcaggaatcattgtgatacatctagccttaatc |
23955921 |
T |
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| Q |
156 |
aatctaaatctactgatgta |
175 |
Q |
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|| ||||||||| ||||||| |
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| T |
23955920 |
aacctaaatctattgatgta |
23955901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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