View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_high_13 (Length: 439)
Name: NF15126_high_13
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_13 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 41524116 - 41524524
Alignment:
| Q |
22 |
cagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524116 |
cagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaa |
41524215 |
T |
|
| Q |
122 |
aacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaa |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524216 |
aacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaa |
41524315 |
T |
|
| Q |
222 |
acttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttag |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524316 |
gcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcctccatcctcttttcattcaacttcctcaactccaaaatcttag |
41524415 |
T |
|
| Q |
322 |
cctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttcttcaacttctcaacttcctcctctaattcattctt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524416 |
cctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttcttcaacttctcaacttcctcctctaattcattctt |
41524515 |
T |
|
| Q |
422 |
catctcact |
430 |
Q |
| |
|
| ||||||| |
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|
| T |
41524516 |
cttctcact |
41524524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 41515165 - 41515546
Alignment:
| Q |
22 |
cagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||| |||||||||| |||||||||| |||||||| |
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|
| T |
41515165 |
cagccaacttactcttttctttccccaacctacttatagtttccttatatttcttcactatttccttcaattcgccatttttaacctcaaccccagccaa |
41515264 |
T |
|
| Q |
122 |
aacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaa |
221 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
41515265 |
agcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgccatcatctaaccatttcttcttcgatttcctcaactccgaa |
41515364 |
T |
|
| Q |
222 |
acttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttag |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
41515365 |
acttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatcccccatcctcttttcattcaacttcctcaactccaaaatttcag |
41515464 |
T |
|
| Q |
322 |
cctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttcttcaacttctcaacttc |
403 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| ||||||||||| | |||| | ||||||||| |||||||| |
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|
| T |
41515465 |
actctaattcaccattctttcttcttaacacataaatttcattgctaccatcaaaacatttctccttcaacttttcaacttc |
41515546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 55 - 418
Target Start/End: Original strand, 41499389 - 41499752
Alignment:
| Q |
55 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
154 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || || || || |||||||||| |||| ||||||||||||| |||||||||||| |
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|
| T |
41499389 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt |
41499488 |
T |
|
| Q |
155 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
254 |
Q |
| |
|
| | | | ||||| ||||||||||||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||||||||| ||| |
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|
| T |
41499489 |
gcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctctt |
41499588 |
T |
|
| Q |
255 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
354 |
Q |
| |
|
| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||| | || |||| ||| || ||||| ||||||||||| |
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|
| T |
41499589 |
agcacaacaagttcattattatcctccagcatcttttcatttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacac |
41499688 |
T |
|
| Q |
355 |
caatttcatagctaccatcaacatattttttcttcaacttctcaacttcctcctctaattcatt |
418 |
Q |
| |
|
||| ||||| ||||||||||||| ||| | |||||| ||| |||||| |||||| |||||| |
|
|
| T |
41499689 |
caacttcattgctaccatcaacaagtttctccttcaaattcataacttcaacctctagttcatt |
41499752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 55 - 360
Target Start/End: Original strand, 41503582 - 41503887
Alignment:
| Q |
55 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
154 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || ||| || || |||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
41503582 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt |
41503681 |
T |
|
| Q |
155 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
254 |
Q |
| |
|
| | |||| ||||| |||| |||||| |||||| |||| |||||| | |||| | |||| ||||||||||||| |||||||||||||||| ||| |
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|
| T |
41503682 |
gcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaactccaaaacttcatgctctaatttaccaatcatttctctt |
41503781 |
T |
|
| Q |
255 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
354 |
Q |
| |
|
| |||| ||||||| ||||||||||||| | |||||||||| || |||||||||||||||| | || |||||| | |||| |||| ||||||||||||| |
|
|
| T |
41503782 |
agcacaacaagttcgttattatcctccaccatcttttcatttaatttcctcaactccaaaacttcagactctagtttaccagtcttacttcttaacacat |
41503881 |
T |
|
| Q |
355 |
caattt |
360 |
Q |
| |
|
|||||| |
|
|
| T |
41503882 |
caattt |
41503887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 41519327 - 41519439
Alignment:
| Q |
81 |
gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc |
180 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| |||| | | | |||| |||||| |||||| | |
|
|
| T |
41519327 |
gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattac |
41519426 |
T |
|
| Q |
181 |
tatcatctaacca |
193 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41519427 |
tatcatctaacca |
41519439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 41503900 - 41504074
Alignment:
| Q |
22 |
cagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaa |
121 |
Q |
| |
|
||||||| || || |||||||||| |||| |||||||| ||||| ||| |||| ||| |||||| ||||| |||| || || || | ||||||| |
|
|
| T |
41503900 |
cagccaatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagccaa |
41503999 |
T |
|
| Q |
122 |
aacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt |
196 |
Q |
| |
|
| ||||||| ||| |||||||||||| |||||| | |||| |||||| |||||| |||||||| |||||||| |
|
|
| T |
41504000 |
atcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt |
41504074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 363
Target Start/End: Complemental strand, 41702966 - 41702837
Alignment:
| Q |
234 |
aatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcac |
333 |
Q |
| |
|
|||| ||||||||||||||| |||||||| | |||| ||| ||| ||| || |||| || |||||| |||||||||||| | | ||||| ||| |
|
|
| T |
41702966 |
aattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaa |
41702867 |
T |
|
| Q |
334 |
cattctttcttcttaacacatcaatttcat |
363 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |
|
|
| T |
41702866 |
caatctttcttcttaacacatcaacttcat |
41702837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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