View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_16 (Length: 420)
Name: NF15126_high_16
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 63 - 406
Target Start/End: Original strand, 11715120 - 11715460
Alignment:
| Q |
63 |
aatgtgacgttgttaacttacgtcctacttannnnnnngggagtattttaccaatattacataagctagattcaagtgaagataactcaatctcacaaat |
162 |
Q |
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| T |
11715120 |
aatgtgaagttgttaacttaca-cctacttatttttttgggagtattttaccaatattacataagctagattcaagtgaagataactcaatttcacaaat |
11715218 |
T |
|
| Q |
163 |
tgatgagactcataaagacaactagaagcagttatacttttccagaaagttagttagattcagttacttgttatgtaagtcactctatcctataacagac |
262 |
Q |
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| T |
11715219 |
tgatgagacttataaagacaactagaagcagttata-ttttccaaaaagttagttagatttagttacttgttatgtaagtcactctatcctataacagac |
11715317 |
T |
|
| Q |
263 |
atagcttagcttatgacggtgactacctacatgta-taaataattgaatgaagtagggaaaatcactttactcctagcatgcatttgagctctcaatttt |
361 |
Q |
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| T |
11715318 |
atagcttagcttatgacgatgactacct--atttactagatcattgaatgaagtaagaaaaatcactttactcctatcatgcatttgagctctcaatttt |
11715415 |
T |
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| Q |
362 |
tctaatttgcatattcataatacagtatcagtcctatttgtttct |
406 |
Q |
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| T |
11715416 |
tctaatttgcatattcataatacggtatctgtcctatttgtttct |
11715460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 63 - 406
Target Start/End: Complemental strand, 11685956 - 11685613
Alignment:
| Q |
63 |
aatgtgacgttgttaacttacgtcctacttannnnnnngggagtattttaccaatattacataagctagattcaagtgaagataactcaatctcacaaat |
162 |
Q |
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| T |
11685956 |
aatgtgaagttgttaacttaca-cctacttatttttttgggagtattttaccaatattacataagctagattcaagtgaagataactcaatttcacaaat |
11685858 |
T |
|
| Q |
163 |
tgatgagactcataaa--gacaactagaagcagttatacttttccagaaagttagttagattcagttacttgttatgtaagtcactctatcctataacag |
260 |
Q |
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| T |
11685857 |
tgatgagacttataaaaagacaactagaagcgattatacttttccaaaaagttagttagatttagttacttgttatgtaagtcactctatcctataacag |
11685758 |
T |
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| Q |
261 |
acatagcttagcttatgacggtgactacctacatgta-taaataattgaatgaagtagggaaaatcactttactcctagcatgcatttgagctctcaatt |
359 |
Q |
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| T |
11685757 |
acatagcttagcttatgacgatgactacct--atttactagatcattgaatgaagtaaggaaaatcactttactcctatcatgcatttgagctctcaatt |
11685660 |
T |
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| Q |
360 |
tttctaatttgcatattcataatacagtatcagtcctatttgtttct |
406 |
Q |
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| T |
11685659 |
tttctaatttgcatattcataatacggtatctgtcctatttgtttct |
11685613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 27653389 - 27653341
Alignment:
| Q |
345 |
tttgagctctcaatttttctaatttgcatattcataatacagtatcagtc |
394 |
Q |
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| T |
27653389 |
tttgagctctcaatttt-ctaatttgcatattcataatacagtatcagtc |
27653341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11689971 - 11689907
Alignment:
| Q |
1 |
caataagctaattttatgtgctgccattcggctactccttcactaaataatcttcattgattaat |
65 |
Q |
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| T |
11689971 |
caataagctaaagttatgtgctgccatccggctagtccttcactaaataatcttaattgtttaat |
11689907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 11721099 - 11721151
Alignment:
| Q |
13 |
tttatgtgctgccattcggctactccttcactaaataatcttcattgattaat |
65 |
Q |
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| T |
11721099 |
tttacgtgctgccatccggctagtccttcactaaataatcttaattgattaat |
11721151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 134
Target Start/End: Complemental strand, 27653446 - 27653414
Alignment:
| Q |
102 |
ggagtattttaccaatattacataagctagatt |
134 |
Q |
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| T |
27653446 |
ggagtattttagcaatattacataagctagatt |
27653414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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