View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_20 (Length: 360)
Name: NF15126_high_20
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_20 |
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| [»] scaffold0864 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 113 - 350
Target Start/End: Original strand, 5264015 - 5264252
Alignment:
| Q |
113 |
tgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgtctgacgaagagcctct |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| | ||||| ||||||||||| |||||||||||||||| |
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| T |
5264015 |
tgaagattgaaatatttgaaaagtagtaattgttgaataaaattacccgcggttgtctattacagacccttttatgctagctgcctgacgaagagcctct |
5264114 |
T |
|
| Q |
213 |
ctccaactttgcaccaactcctcctcttttgaaattttgttcaaaagactttgaaaagatatttcaaactctcctatctgatgacgcacttcagatggtt |
312 |
Q |
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||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
5264115 |
ctccaactttgcaccaattccttctcgattgaaattttgttcaaaagattttgaaaagatattccaaactctcctgtctgatgacgcacttcagatggtt |
5264214 |
T |
|
| Q |
313 |
ctaaatggtagaacactggcacaaccttttgtcctatg |
350 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |
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| T |
5264215 |
ctaaatggtagaacaatggcacaaccttttgtcctatg |
5264252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 106 - 350
Target Start/End: Original strand, 5331539 - 5331780
Alignment:
| Q |
106 |
aagaaattgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgtctgacgaag |
205 |
Q |
| |
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|||||| ||||||||||||||||||||||||| | ||||||||||| ||||| ||||||| |||||| ||||||| |||| |||||| |||||||| |
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| T |
5331539 |
aagaaaatgaagattgaaatatttgaaaagta---actgttgaatgaatttaccgtgacttgagtatttcaaacccttttatgttagctgcatgacgaag |
5331635 |
T |
|
| Q |
206 |
agcctctctccaactttgcaccaactcctcctcttttgaaattttgttcaaaagactttgaaaagatatttcaaactctcctatctgatgacgcacttca |
305 |
Q |
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| T |
5331636 |
agcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaataattttccaaaatctcctgtctgatgacgcacttta |
5331735 |
T |
|
| Q |
306 |
gatggttctaaatggtagaacactggcacaaccttttgtcctatg |
350 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5331736 |
gatggttctaaatggtagaacactggcacaacctttagtcctatg |
5331780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 5184710 - 5184860
Alignment:
| Q |
200 |
acgaagagcctctctccaactttgcaccaactcctcctcttttgaaattttgttcaaaagactttgaaaagatatttcaaactctcctatctgatgacgc |
299 |
Q |
| |
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|||||||||||||||||||| | ||||||| |||||||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||| |
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| T |
5184710 |
acgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgt |
5184809 |
T |
|
| Q |
300 |
acttcagatggttctaaatggtagaacactggcacaaccttttgtcctatg |
350 |
Q |
| |
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|||||||| || |||| ||||||||||||||| ||||| |||||||||| |
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| T |
5184810 |
acttcagaggggtctacatggtagaacactggaacaacaacttgtcctatg |
5184860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 350
Target Start/End: Complemental strand, 5444425 - 5444204
Alignment:
| Q |
129 |
tgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgtctgacgaagagcctctctccaactttgcacca |
228 |
Q |
| |
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||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||| ||| | |||| || ||||||||||| | |||||||| |||||| |
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| T |
5444425 |
tgaaaagaagtagttgttgaatgaaattacccggacttcactattggaaaccctgcgatgtttgctgcctcacgaagagcctttttccaacttagcacca |
5444326 |
T |
|
| Q |
229 |
actcctcctcttttgaaattttgttcaaaagactttgaaaagatatttcaaactctcctatctgatgacgcacttcagatggttctaaatggtagaacac |
328 |
Q |
| |
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| | ||||| ||||| || ||| |||||||||| |||||||| |||| |||||| |||| || ||| |||||||||||| || |||| | |||||||||| |
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| T |
5444325 |
atttctccttttttggaactttcttcaaaagacgttgaaaagctattccaaactttcctctcggattacgcacttcagagggatctacacggtagaacac |
5444226 |
T |
|
| Q |
329 |
tggcacaaccttttgtcctatg |
350 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
5444225 |
tggcacaaccacttgtcctatg |
5444204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 338
Target Start/End: Complemental strand, 5393438 - 5393227
Alignment:
| Q |
127 |
tttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgtctgacgaagagcctctctccaactttgcac |
226 |
Q |
| |
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|||||| | |||||||||||||| ||||||||| || || ||||| |||||||||||||||||||| | |||||||||| ||||||||||| || | |
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| T |
5393438 |
tttgaacaatagtaattgttgaacgaaattacctggaattcagtattaaaaaccctgctatgctagctgcccgacgaagagctgctctccaacttagctc |
5393339 |
T |
|
| Q |
227 |
caactcctcctcttttgaaattttgttcaaaagactttgaaaagatatttcaaactctcctatctgatgacgcacttcagatggttctaaatggtagaac |
326 |
Q |
| |
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|| ||| ||| |||||| |||||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||| || ||| |||||||||| |
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| T |
5393338 |
taattccaccttgtttgaagttttgttcaaaaaactttgaaaagatattccaaactctcctttctgataacgcacttcagtaggggctacatggtagaac |
5393239 |
T |
|
| Q |
327 |
actggcacaacc |
338 |
Q |
| |
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|| || |||||| |
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| T |
5393238 |
accggaacaacc |
5393227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 338
Target Start/End: Complemental strand, 5394594 - 5394456
Alignment:
| Q |
200 |
acgaagagcctctctccaactttgcaccaactcctcctcttttgaaattttgttcaaaagactttgaaaagatatttcaaactctcctatctgatgacgc |
299 |
Q |
| |
|
||||||||||||| ||||| || || |||| ||| |||| ||| ||||| ||||||||||||||| ||| | || ||||||| ||| |||||| ||| |
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| T |
5394594 |
acgaagagcctctttccaatttagcgccaattccacctcgtttaaaattctgttcaaaagactttcaaacgcccttccaaactcacctttctgattgcgc |
5394495 |
T |
|
| Q |
300 |
acttcagatggttctaaatggtagaacactggcacaacc |
338 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| |||||| |
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|
| T |
5394494 |
acttcagagggatctacatggtagaacactggaacaacc |
5394456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 5093108 - 5093048
Alignment:
| Q |
277 |
caaactctcctatctgatgacgcacttcagatggttctaaatggtagaacactggcacaac |
337 |
Q |
| |
|
||||||| ||| |||| ||||| |||||||| || |||| || |||||||||||||||||| |
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|
| T |
5093108 |
caaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac |
5093048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 4613 - 4517
Alignment:
| Q |
254 |
caaaagactttgaaaagatatttcaaactctcctatctgatgacgcacttcagatggttctaaatggtagaacactggcacaaccttttgtcctatg |
350 |
Q |
| |
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|||||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
4613 |
caaaagactttgaaaagatactccaaactctcctgtctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatg |
4517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 4800 - 4680
Alignment:
| Q |
106 |
aagaaattgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgtctgacgaag |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | | ||||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||| |
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|
| T |
4800 |
aagaaaatgaagattgaaatatttgaaaagta---actattgaatgaaattaccgtgacttgagtatttcaaaccctgcaatgctagctgcctgacgaag |
4704 |
T |
|
| Q |
206 |
agcctctctccaactttgcaccaa |
229 |
Q |
| |
|
| ||||||||||| |||||||||| |
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| T |
4703 |
atcctctctccaattttgcaccaa |
4680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 22589018 - 22589114
Alignment:
| Q |
254 |
caaaagactttgaaaagatatttcaaactctcctatctgatgacgcacttcagatggttctaaatggtagaacactggcacaaccttttgtcctatg |
350 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
22589018 |
caaaagactaagaaaagatattccaaactctcctgtctgatggcgcacttcagatggttctaaatggtagaacacagacacaaccttttgtcctatg |
22589114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 22588816 - 22588925
Alignment:
| Q |
106 |
aagaaattgaagattgaaatatttgaaaagtagtaattgttgaatgaaattaccctgacttgggtattttaaaccctgctatgctagctgtctgacgaag |
205 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| | | ||||||||||||||| ||||||| |||||| ||||||||| ||||||||| ||||||||| |
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| T |
22588816 |
aagaaaatgaagatggaaatatttgaaaagta---actattgaatgaaattaccgtgacttgagtatttcaaaccctgcaatgctagctacctgacgaag |
22588912 |
T |
|
| Q |
206 |
agcctctctccaa |
218 |
Q |
| |
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||||||| ||||| |
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|
| T |
22588913 |
agcctctatccaa |
22588925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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