View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_31 (Length: 310)
Name: NF15126_high_31
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 32320685 - 32320393
Alignment:
| Q |
4 |
tcgaataatatatcttaatggccatccaacagcctatttaattaaagggtacgattaaacaagaagacataacaaacttcattggttttagccaaccaaa |
103 |
Q |
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| T |
32320685 |
tcgaagaatacatcttgatggccatccaacagcctatttaattaaagggtacgattaaacaagaagacataacaaacttcattggttttagccagccaaa |
32320586 |
T |
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| Q |
104 |
caacaacatatccaacgaaaataatctcaaatttggcctaaacacaagcaaccaaatttgagactataaaatacagaaatgtaaacacaaagttcaagta |
203 |
Q |
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| T |
32320585 |
caagaacatatccaacgaaaatgatctcaaatttggcctaaacacaagcaaccaaatttgagactataaaatacataaatgtaaacacaaagttcaagta |
32320486 |
T |
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| Q |
204 |
acaaaatccaacagtcttttaggtttttcataattc-ataaaacaatagcaaacctacctagatcttaagatccaaatcgagctcttcaaagt |
295 |
Q |
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| T |
32320485 |
acaaaatccaacagtcttttaagtttttcataattcaataaaacaatagcaaacctacctagatcttaagatccaaatcgagctcttcaaagt |
32320393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 295
Target Start/End: Complemental strand, 32367542 - 32367288
Alignment:
| Q |
42 |
taattaaagggtacgattaaacaagaagacataacaaacttcattggttttagccaaccaaacaacaacatatccaacgaaaataatctcaaatttggcc |
141 |
Q |
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| T |
32367542 |
taattaaaaggtacgattaaaaaagaagacataacaaacttcatgatttttagccggtcaaacaagaacagatccaacgaaaataatctcaaatttggct |
32367443 |
T |
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| Q |
142 |
taaacacaagcaaccaaatttgagactataaaatacagaaatgtaaacacaaagttcaagtaacaaaatccaacagtcttttaggtttttcataattc-a |
240 |
Q |
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| T |
32367442 |
taaacacaagcagccaaatttgagactctaaaatagagaaatgtaaaccaaaagttcaagtaaataagtgcaaaagacttttaagtttttcataattcaa |
32367343 |
T |
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| Q |
241 |
taaaacaatagcaaacctacctagatcttaagatccaaatcgagctcttcaaagt |
295 |
Q |
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|||||| ||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
32367342 |
taaaaccatagcaaacctacctagatcttaagttctaaatcatgctcttcaaagt |
32367288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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