View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15126_high_34 (Length: 278)

Name: NF15126_high_34
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15126_high_34
NF15126_high_34
[»] scaffold0505 (1 HSPs)
scaffold0505 (11-261)||(11161-11411)
[»] chr3 (3 HSPs)
chr3 (11-261)||(13086245-13086495)
chr3 (11-113)||(294429-294531)
chr3 (40-108)||(2000799-2000867)
[»] chr7 (6 HSPs)
chr7 (11-146)||(20589957-20590092)
chr7 (16-164)||(7587704-7587852)
chr7 (17-150)||(12324611-12324744)
chr7 (17-108)||(21259286-21259378)
chr7 (75-248)||(13393233-13393411)
chr7 (29-108)||(11587264-11587343)
[»] chr2 (2 HSPs)
chr2 (18-141)||(27109856-27109977)
chr2 (36-122)||(21529173-21529259)
[»] chr4 (1 HSPs)
chr4 (23-108)||(15701532-15701617)
[»] chr6 (3 HSPs)
chr6 (28-108)||(19076371-19076451)
chr6 (11-107)||(25803393-25803489)
chr6 (80-203)||(12386319-12386447)
[»] scaffold0037 (1 HSPs)
scaffold0037 (39-113)||(111536-111610)
[»] chr5 (2 HSPs)
chr5 (67-113)||(22406039-22406085)
chr5 (55-144)||(17917424-17917513)
[»] scaffold0059 (1 HSPs)
scaffold0059 (11-107)||(51376-51472)
[»] scaffold0315 (1 HSPs)
scaffold0315 (55-116)||(12329-12390)
[»] scaffold0226 (1 HSPs)
scaffold0226 (37-106)||(8814-8883)
[»] chr1 (1 HSPs)
chr1 (58-122)||(17852639-17852703)


Alignment Details
Target: scaffold0505 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 11411 - 11161
Alignment:
Q  11 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11411 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata 11312  T
Q  111 ttggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11311 ttggaccccctttgattgagtgctcttttcatcagttcttacattcttgacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg 11212  T
Q  211 tcttctgtcaacttgtttcaagattctcctgaactgttttccaagaagcac 261  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11211 tcttctgtcaacttgtttcaagattctcctgaactgttttcctagaagcac 11161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 13086495 - 13086245
Alignment:
Q  11 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13086495 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttttgatgtgaccatatccttcacattcatgata 13086396  T
Q  111 ttggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13086395 ttggaccccctttgattgagtgctcttttcatcagttcttacattcttgacatttctaggttctgatgttggacctgatgttctgaacatttgacctagg 13086296  T
Q  211 tcttctgtcaacttgtttcaagattctcctgaactgttttccaagaagcac 261  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13086295 tcttctgtcaacttgtttcaagattctcctgaactgttttcctagaagcac 13086245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 294429 - 294531
Alignment:
Q  11 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata 110  Q
    ||||||||| |||||| ||||||   || ||||||||||||   || ||| | || ||||||| |||||| ||||||||||||||||||||||||||| |    
T  294429 catcatcatgagaccatgaaacagttaagcttttcttttgtttcttaagataagtagcacattctgttctaatgtgaccatatccttcacattcatgaca 294528  T
Q  111 ttg 113  Q
    |||    
T  294529 ttg 294531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 2000867 - 2000799
Alignment:
Q  40 cttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga 108  Q
    ||||||||||||   |||||||| |||| ||||| |||  | || ||||||||||||||||||||||||    
T  2000867 cttttcttttgtttcttgagaaaagtggtacattctgtcataatatgaccatatccttcacattcatga 2000799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 20590092 - 20589957
Alignment:
Q  11 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgata 110  Q
    |||| ||||||||||||||||||| |||  ||||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |    
T  20590092 catcttcatcagaccaagaaacaaccaagattttcttttgtctcttgagaaatgtggcacattttgatctaatgtgaccatatccttcacattcatgaca 20589993  T
Q  111 ttggaccccctttgattgagtgctcttttcatcagt 146  Q
     ||||| ||||| |||||| ||||||| ||||||||    
T  20589992 ctggactcccttggattgactgctcttctcatcagt 20589957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 7587852 - 7587704
Alignment:
Q  16 tcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattgga 115  Q
    ||||||||||||||||||| ||| |||||||| |||   ||||| || ||||||||||  |||||||||| |||||||||||||||||||||| |||| |    
T  7587852 tcatcagaccaagaaacaaccaagcttttcttctgtttcttgaggaaagtggcacattcagttctgatgtaaccatatccttcacattcatgacattgaa 7587753  T
Q  116 ccccctttgattgagtgctcttttcatcagttcttacattcttcacatt 164  Q
    | ||||| |||||| || | || ||||||| | |||| |||||||||||    
T  7587752 ctcccttggattgattgttattgtcatcagattttaccttcttcacatt 7587704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 12324611 - 12324744
Alignment:
Q  17 catcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggac 116  Q
    |||| ||||||||||||| |||||||||||| |||  ||| ||||| | |||||||| ||||||||| || |||||||||||||| |||||| |||| ||    
T  12324611 catctgaccaagaaacaaccaaacttttcttctgtttttttagaaaagaggcacattatgttctgatatgcccatatccttcacactcatgacattgaac 12324710  T
Q  117 cccctttgattgagtgctcttttcatcagttctt 150  Q
     || ||  ||||||   |||||||||||| ||||    
T  12324711 acctttgtattgagaattcttttcatcagatctt 12324744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 21259286 - 21259378
Alignment:
Q  17 catcagaccaagaaacaaacaaacttttcttttgtcctttga-gaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga 108  Q
    |||| ||||| ||||||| ||| |||||||||| | |||| | |||| |||||||||| |||||||||||||||||  |||||||||||||||    
T  21259286 catctgaccatgaaacaaccaagcttttctttttttcttttaagaaaggtggcacattctgttctgatgtgaccatggccttcacattcatga 21259378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 13393411 - 13393233
Alignment:
Q  75 tgttctgatgtgaccatatccttcacattcatgatattggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggtt-- 172  Q
    |||||||||||| ||| | ||||||| ||||||  | || || |||||||||||||||  ||| ||||||||||||  ||| ||||||| || | |||      
T  13393411 tgttctgatgtgtccaaacccttcaccttcatggcactgaactccctttgattgagtgtccttctcatcagttcttgtatttttcacatatccatgttga 13393312  T
Q  173 ctg---atgttggacctgatgttctgaacatttgacctaggtcttctgtcaacttgtttcaagattctcctgaactgtt 248  Q
    |||   |||||| ||||||||||||||||||| |  ||| | |   | ||||||||||||||||| ||| |||||||||    
T  13393311 ctgtcaatgttgtacctgatgttctgaacattcgttctaagccaattctcaacttgtttcaagatcctcatgaactgtt 13393233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 11587264 - 11587343
Alignment:
Q  29 aaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga 108  Q
    ||||| ||| ||||||||||||    |||| ||| |||| ||||| |||||| |||||||||||||||||||| ||||||    
T  11587264 aaacagacagacttttcttttgcttcttgataaaagtggtacattctgttctaatgtgaccatatccttcacactcatga 11587343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 27109856 - 27109977
Alignment:
Q  18 atcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggacc 117  Q
    ||||||||| ||||||| ||| ||||| || | ||  |||| ||||| |||||||| |||| | |||||||||||||| |||||||||||| |||||||     
T  27109856 atcagaccacgaaacaaccaagcttttattgtctc--ttgaaaaatgcggcacattctgtttttatgtgaccatatccatcacattcatgacattggact 27109953  T
Q  118 ccctttgattgagtgctcttttca 141  Q
     ||||  ||||| |||||||||||    
T  27109954 gccttgaattgattgctcttttca 27109977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 21529173 - 21529259
Alignment:
Q  36 caaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggaccccctt 122  Q
    |||| |||| ||||||| ||| ||||| ||  || ||| |||||| || |||||||||||||||||||||||| |||| || |||||    
T  21529173 caaaattttattttgtcttttaagaaaagtatcatattctgttctaatatgaccatatccttcacattcatgacattgaacaccctt 21529259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 15701617 - 15701532
Alignment:
Q  23 accaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga 108  Q
    |||| |||||| ||||  |||||||||||   |||||||||||||||||||| || || |||||  ||||||||||||||||||||    
T  15701617 accaggaaacagacaagtttttcttttgtttcttgagaaatgtggcacatttcgtcctaatgtgtacatatccttcacattcatga 15701532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 19076371 - 19076451
Alignment:
Q  28 gaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatga 108  Q
    ||||||| ||| ||||||||||||   || ||||| |||| ||||||||| || | |||||||||||||||||||||||||    
T  19076371 gaaacaatcaagcttttcttttgtttcttaagaaaagtggtacattttgtcctaaggtgaccatatccttcacattcatga 19076451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 25803393 - 25803489
Alignment:
Q  11 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatg 107  Q
    |||||||||||||||| |||||||  || |||||||| |||   || || || || ||||||| ||| ||||| |||||||||||||||||||||||    
T  25803393 catcatcatcagaccaggaaacaattaagcttttcttctgtttctttagtaaagtagcacattctgtcctgatatgaccatatccttcacattcatg 25803489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 12386447 - 12386319
Alignment:
Q  80 tgatgtgaccatatccttcacattcatgatattggaccccctttgattgagtgctcttttcatcagttcttacattcttcacatttctaggtt-----ct 174  Q
    ||||||| ||| | |||| ||||||| || ||||||| ||||| |||||||||  ||||| ||||||||||| ||| ||||||| |  | |||     ||    
T  12386447 tgatgtgtccaaaccctttacattcaagacattggactcccttagattgagtgtccttttgatcagttcttatatttttcacatattcaagttgattgct 12386348  T
Q  175 gatgttggacctgatgttctgaacatttg 203  Q
     |||||||||||||||||||||| |||||    
T  12386347 aatgttggacctgatgttctgaatatttg 12386319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 111610 - 111536
Alignment:
Q  39 acttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattg 113  Q
    |||||||||||||   || ||||| || ||||||||||| ||||| || ||||||||||||||||||||| ||||    
T  111610 acttttcttttgtttcttcagaaaagtagcacattttgtactgatatggccatatccttcacattcatgacattg 111536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 22406085 - 22406039
Alignment:
Q  67 gcacattttgttctgatgtgaccatatccttcacattcatgatattg 113  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  22406085 gcacattctgttctgatatgaccatatccttcacattcatgacattg 22406039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 17917513 - 17917424
Alignment:
Q  55 ttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggaccccctttgattgagtgctcttttcatca 144  Q
    |||||||| || |||||||  ||||||||||| ||||| ||||||||||||||| |||| || || ||  ||||| || |||||||||||    
T  17917513 ttgagaaaagtagcacattcagttctgatgtgtccataaccttcacattcatgacattgaacacctttgtattgattgttcttttcatca 17917424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 51472 - 51376
Alignment:
Q  11 catcatcatcagaccaagaaacaaacaaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatg 107  Q
    |||||||||| |||||  |||||   ||||||||||| |||   || |||||||| ||||||| ||||||||| || ||||| ||||||||||||||    
T  51472 catcatcatctgaccagaaaacagttaaacttttcttctgtttctttagaaatgttgcacattctgttctgatatgcccatacccttcacattcatg 51376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 12390 - 12329
Alignment:
Q  55 ttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggac 116  Q
    |||||||| || |||||||  ||||| ||||| ||||| ||||||||||||||| |||||||    
T  12390 ttgagaaaagtagcacattcagttcttatgtgtccataaccttcacattcatgacattggac 12329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 8883 - 8814
Alignment:
Q  37 aaacttttcttttgtcctttgagaaatgtggcacattttgttctgatgtgaccatatccttcacattcat 106  Q
    ||||||||||| |||   || ||||| || ||||||| ||||||||| || |||||||||||||||||||    
T  8883 aaacttttcttctgtttctttagaaaagtagcacattctgttctgatatggccatatccttcacattcat 8814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 17852703 - 17852639
Alignment:
Q  58 agaaatgtggcacattttgttctgatgtgaccatatccttcacattcatgatattggaccccctt 122  Q
    ||||| |||| ||||| |||| |||| ||||||||||||||||| |||||| |||| || |||||    
T  17852703 agaaaagtggtacattatgttttgatatgaccatatccttcacactcatgacattgaacaccctt 17852639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University