View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_high_4 (Length: 681)
Name: NF15126_high_4
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 9102132 - 9101641
Alignment:
| Q |
18 |
agaatcatacacaaaatacactaattgagatcatagtcaaactcctatcagnnnnnnnnnnnn---aaaacgcctttaaacttatttaggttgtaaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
9102132 |
agaatcatacacaaaatacactaattgagatcatagtcaaactcctatcagtttttttttttttttaaaacgcctttaatcttatttaggttgtaaaaaa |
9102033 |
T |
|
| Q |
115 |
ggattaagtgatagtagtgttagtagtctgaaaaggctatgataaactaaggtgtaagaaaaagagtgatataaggtgtgagggaagattggaaaaggtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9102032 |
ggattaagtgatagtagtgttagtagtctgaaaaggctatgataaactaaggtgtaagaaaaagagtgatataaggtgtgagggaagattggaaaaggtt |
9101933 |
T |
|
| Q |
215 |
atctaaatacaatagtgaaatctcacggttgtgaggactatactcttcaactaaataaccatgatagttcttgtgtgttaactctgcaactatactcttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9101932 |
atctaaatacaatagtgaaatctcacggttgtgaggactatactcttcaactaaataaccatgatagttcttgtgtgttaactctgcaactatactcttt |
9101833 |
T |
|
| Q |
315 |
actctcggtacatgcaaatcaaactacacatacacttaagtgtattgttttaaattgagaaaagatttttacaaagtgcaagatccaatttttaaatagt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9101832 |
actctcggtacatgcaaatcaaactacacatacagttaagtgtattgttttaaattgagaaattttttttacaaagtgaaagatccaatttttaaatagt |
9101733 |
T |
|
| Q |
415 |
cacaattataaccctctttcttgtcactgttatttttacttcaatttaaaaggtctcgctaacaagtattttgagggtattgtttaaggaatct |
508 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
9101732 |
cacaattataaccctctt--ttgtcactgttatttttacttcaatttgaaaggtctcgctaacaaatattttgagggtattgcttaaggaatct |
9101641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 560 - 673
Target Start/End: Complemental strand, 9101591 - 9101478
Alignment:
| Q |
560 |
ctacataattttcaacgtaaaaactactattcttggatgcttaaatgataccctaaagatactttttaacatgaaaacgacgcatgagttccatcaatct |
659 |
Q |
| |
|
||||||||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9101591 |
ctacataatttccaatataaaaactactacttttggatgcttaaatgataccctaaagatactttttaacatgaaaacgacgcatgggttccatcaatct |
9101492 |
T |
|
| Q |
660 |
cacctagtataatc |
673 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
9101491 |
cacctagtttaatc |
9101478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 266 - 461
Target Start/End: Complemental strand, 9082810 - 9082623
Alignment:
| Q |
266 |
taaataaccatgatagttcttgtgtgttaactctgcaactatactctttactctcggtacatgcaaatcaaactacacatacacttaagtgtattgtttt |
365 |
Q |
| |
|
||||||||||| ||| || |||||||||| ||| ||| |||||||||| |||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
9082810 |
taaataaccatcataatttttgtgtgttatttcttcaagtatactctttgctct-------tgcaaatcaaactacacatacacctaagcgtattgtttt |
9082718 |
T |
|
| Q |
366 |
aaattgagaaaagatttttacaaagtgcaagatccaatttttaaatagtcacaattataaccctctttcttgtcactgttatttttacttcaattt |
461 |
Q |
| |
|
| ||||||||| ||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
9082717 |
atattgagaaat-attttaacaaagtgcaagatccaatttttaaagagtgacaattgtaaccctctttcctgtgactgttatttttgctttaattt |
9082623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 316 - 455
Target Start/End: Original strand, 9111046 - 9111184
Alignment:
| Q |
316 |
ctctcggtacatgcaaatcaaactacacatacacttaagtgtattgttttaaattgagaaaagatttttacaaagtgcaagatccaatttttaaatagtc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| | |||||||||||||||||||||||||||| || | | |
|
|
| T |
9111046 |
ctctcggtacatgcaaatcaaactacacatacagttaaatgtatcgttttaaattga-attttttttttacaaagtgcaagatccaatttttgaagggac |
9111144 |
T |
|
| Q |
416 |
acaattataaccctctttcttgtcactgttatttttactt |
455 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||| |||| |
|
|
| T |
9111145 |
acaattataaccctctttcatgtgaccgttattttcactt |
9111184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 9083544 - 9083500
Alignment:
| Q |
214 |
tatctaaatacaatagtgaaatctcacggttgtgaggactatact |
258 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || ||||||||| |
|
|
| T |
9083544 |
tatctaaatactatagtgaaatctcacagttgcgaagactatact |
9083500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 631
Target Start/End: Complemental strand, 13530592 - 13530522
Alignment:
| Q |
561 |
tacataattttcaacgtaaaaactactattcttggatgcttaaatgataccctaaagatactttttaacat |
631 |
Q |
| |
|
|||| ||||||||| ||||||||||||| | ||||||||||||| ||||| ||| || |||| ||||||| |
|
|
| T |
13530592 |
tacacaattttcaaagtaaaaactactaattttggatgcttaaacaataccttaaggacacttgttaacat |
13530522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University