View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_43 (Length: 248)
Name: NF15126_high_43
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 18813357 - 18813542
Alignment:
| Q |
3 |
gaagaatatgttggaattaatatgagcataagagagacattcttgtgccaatatgctacgttctcacttctctatttaatatacttccttttggcaaaaa |
102 |
Q |
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| T |
18813357 |
gaagaatatgttggaattaatatgagcataagagagacattcttgtgccaatatgctacgttctcacttctctatttaatatacttccttttggcaaaaa |
18813456 |
T |
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| Q |
103 |
ccaaattaacatgtacaaagtacaaactacaaaagactttctgatatgtaagtaaaaccacctactatattttgaaatttatctag |
188 |
Q |
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| T |
18813457 |
ccaaattaacatgtacaaagtacaaactacaaaagactttctgatatgtaagtaaaaccacctactgtattttgaaatttatctag |
18813542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 18791468 - 18791610
Alignment:
| Q |
46 |
tgtgccaatatgctacgttctcacttctctatttaatatacttccttttggcaaaaaccaaattaacatgtacaaagtacaaactacaaaagactttctg |
145 |
Q |
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| T |
18791468 |
tgtgccaatatgctacattctcattatactatttaatatacttccttttggaataaaccaaattaacatgtacaaagtacaaactacaaaagactttatg |
18791567 |
T |
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| Q |
146 |
atatgtaagtaaaaccacctactatattttgaaatttatctag |
188 |
Q |
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| T |
18791568 |
atatgtaagtaaaaccacctactgtattttgaaatttacctag |
18791610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 18813560 - 18813625
Alignment:
| Q |
183 |
atctagaactcattttcatataataacatgtttcaagcagttgggttccctcgcacagcccgtcca |
248 |
Q |
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| T |
18813560 |
atctagaactcattttcatataataacatgtttcaagcagttaggttccctcgcacagcccgtcca |
18813625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 18791628 - 18791691
Alignment:
| Q |
183 |
atctagaactcattttcatataataacatgtttcaagcagttgggttccctcgcacagcccgtcca |
248 |
Q |
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| T |
18791628 |
atctagaactc--tttcatataataacatgtttcaagcagttaggttacctcgcacaacctgtcca |
18791691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 18814378 - 18814316
Alignment:
| Q |
186 |
tagaactcattttcatataataacatgtttcaagcagttgggttccctcgcacagcccgtcca |
248 |
Q |
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| T |
18814378 |
tagaactgtttttcatatattaacatgtttcaagcagttaggttacctcgcacagcctgtcca |
18814316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 18814520 - 18814454
Alignment:
| Q |
59 |
tacgttctcacttctctatttaatatacttccttttggcaaaa-accaaattaacatgtacaaagta |
124 |
Q |
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| T |
18814520 |
tacgttgttacttctctatttaatataattccttttggaaaaatacaaaattaacatgtacaaagta |
18814454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 18791953 - 18791905
Alignment:
| Q |
105 |
aaattaacatgtacaaagtacaaactacaaaagactttctgatatgtaa |
153 |
Q |
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| T |
18791953 |
aaattaacatgtacaaagtataaactacataagatattctgacatgtaa |
18791905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 35869327 - 35869228
Alignment:
| Q |
46 |
tgtgccaatatgctacgttctcacttctctatttaatatacttccttttggcaaaaaccaaattaacatgtacaaagtacaaactacaaaagactttctg |
145 |
Q |
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||||||||||| ||| ||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |||| |||||| |
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| T |
35869327 |
tgtgccaatatcctatgttgtcacttctccatttgatatacttccttttggcaaaaacaaaattaacatgtacaaagt-cgaactacacaagattttctg |
35869229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 11327883 - 11327940
Alignment:
| Q |
183 |
atctagaactcattttcatataataacatgtttcaagcagttgggttccctcgcacag |
240 |
Q |
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| T |
11327883 |
atctagaactctttttcatataataacatgtttcaagcagttaggttcccttgcacag |
11327940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 11328899 - 11328837
Alignment:
| Q |
186 |
tagaactcattttcatataataacatgtttcaagcagttgggttccctcgcacagcccgtcca |
248 |
Q |
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||||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
11328899 |
tagaactgtttttcgtataataacatatttcaagcagttaggttccctcgcacagcctgtcca |
11328837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 11329033 - 11328947
Alignment:
| Q |
68 |
acttctctatttaatatacttccttttggcaaaa-accaaattaacatgtacaaagtacaaactacaaaagactttctgatatgtaa |
153 |
Q |
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|||||| ||||||||||| |||||||||| |||| || ||||||| || ||||||||| ||||| || |||| |||||| |||||| |
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| T |
11329033 |
acttctttatttaatataattccttttggaaaaatacaaaattaaaatctacaaagtataaactgcagaagatattctgacatgtaa |
11328947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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