View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15126_high_5 (Length: 662)
Name: NF15126_high_5
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 311 - 647
Target Start/End: Original strand, 30018816 - 30019157
Alignment:
| Q |
311 |
tgtttaagtatatcccatgaaagtaacatcaaagttttaaatattaaccaagataagcaaaactatagtaacatcaaataaattattcaattaaaatttt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30018816 |
tgtttaagtatatcccatgaaagtaacatcaaagttttaaatattaaccaagataagcaaaactatagtaacatcaaataaattattcaattaaaatttt |
30018915 |
T |
|
| Q |
411 |
ctatctcatgacataagcaaaactatactacttaatgcaagttttataggtaggtaaacggtccatcaatttcaacacatgtgtgagattaagtggtggc |
510 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30018916 |
ctatctcatgacataagcaaaattatactacttaatgcaagttttataggtaggtaaacggtccatcaatttcaacacatgtgtgagatgaagtggtggc |
30019015 |
T |
|
| Q |
511 |
ctagagaatgtataccatgt---atgattgatcatgcataccatagaagcatataac---taagtgtggaatatatcctctcnnnnnnnnngtgtggaat |
604 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30019016 |
ctagagaatgtatatcatgtatgatgattgatcatgcataccatagaagcatataacttataagtgtggaatatatcctct-aaaaaaaaagtgtggaat |
30019114 |
T |
|
| Q |
605 |
atatatgcatatatattatgtatctcttgtcttgcaccctatg |
647 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30019115 |
atatatgcatatatagtatgtatctcttgtcttgcaccctatg |
30019157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30018535 - 30018718
Alignment:
| Q |
1 |
aacctcatcattttcctctatcttttctctcctatcactctcaannnnnnnngttagagggatgtttgtggaagagggttgaacctcaaaaattacacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30018535 |
aacctcatcattttcctctatcttttctctcctatcactctcaattttttttgttagagggatgtttgtggaagagggttgaacctaaaaaattacacct |
30018634 |
T |
|
| Q |
101 |
ccatagtgggcaactttgcagcatcaacctgcnnnnnnncaccaagaccaatagttgtcatcatcttggttaacaaatatatgt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30018635 |
ccatagtgggcaactttgcagcatcaacctgcaagaaaacaccaagaccaatagttgtcatcatcttggttaacaaatatatgt |
30018718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University