View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_55 (Length: 212)
Name: NF15126_high_55
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_55 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 13277 - 13097
Alignment:
| Q |
16 |
gattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtggatggcttgctatgtctcttacttttggtttaac |
115 |
Q |
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| T |
13277 |
gattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtggatggcttgctatgtctcttacttttggtttaac |
13178 |
T |
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| Q |
116 |
taagcttgtaaaccatgttgtagtttgatcattttgatcaactttaactctttctttccatggtacttaatttgtaatttt |
196 |
Q |
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| T |
13177 |
taagcttgtaaaccatgttgtagtttgatcattttgatcaactttaaatctttctttccatggtacttaatttgtaatttt |
13097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 18957 - 18777
Alignment:
| Q |
16 |
gattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtggatggcttgctatgtctcttacttttggtttaac |
115 |
Q |
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| T |
18957 |
gattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtggatggcttgctatgtctcttacttttggtttaac |
18858 |
T |
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| Q |
116 |
taagcttgtaaaccatgttgtagtttgatcattttgatcaactttaactctttctttccatggtacttaatttgtaatttt |
196 |
Q |
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| T |
18857 |
taagcttgtaaaccatgttgtagtttgatcattttgatcaactttaaatctttctttccatggtacttaatttgtaatttt |
18777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 1293317 - 1293497
Alignment:
| Q |
16 |
gattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtggatggcttgctatgtctcttacttttggtttaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293317 |
gattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtggatggcttgctatgtctcttacttttggtttaac |
1293416 |
T |
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| Q |
116 |
taagcttgtaaaccatgttgtagtttgatcattttgatcaactttaactctttctttccatggtacttaatttgtaatttt |
196 |
Q |
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| T |
1293417 |
taagcttgtaaaccatgttgtagtttgatcattttgatcaactttaaatctttctttccatggtacttaatttgtaatttt |
1293497 |
T |
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