View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15126_high_58 (Length: 202)

Name: NF15126_high_58
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15126_high_58
NF15126_high_58
[»] scaffold0038 (4 HSPs)
scaffold0038 (20-145)||(43508-43633)
scaffold0038 (20-171)||(35258-35403)
scaffold0038 (20-180)||(117313-117469)
scaffold0038 (29-177)||(27974-28117)
[»] chr6 (29 HSPs)
chr6 (20-145)||(28243346-28243471)
chr6 (20-145)||(28297246-28297371)
chr6 (20-145)||(28514702-28514827)
chr6 (20-145)||(28185944-28186069)
chr6 (20-171)||(28235096-28235241)
chr6 (20-180)||(28325998-28326154)
chr6 (20-145)||(28181668-28181793)
chr6 (29-177)||(28227476-28227619)
chr6 (30-127)||(29826552-29826649)
chr6 (30-125)||(25539114-25539209)
chr6 (30-125)||(26143439-26143534)
chr6 (30-125)||(26647050-26647145)
chr6 (30-125)||(26656536-26656631)
chr6 (30-125)||(26753018-26753113)
chr6 (30-125)||(26762507-26762602)
chr6 (30-145)||(28097959-28098074)
chr6 (30-120)||(26623847-26623937)
chr6 (30-120)||(26729824-26729914)
chr6 (26-84)||(31288917-31288975)
chr6 (26-79)||(26959743-26959796)
chr6 (30-125)||(25580293-25580388)
chr6 (30-125)||(26884641-26884736)
chr6 (30-125)||(27530817-27530912)
chr6 (101-156)||(28150439-28150494)
chr6 (59-125)||(25511509-25511575)
chr6 (30-144)||(27610636-27610750)
chr6 (30-120)||(27698102-27698192)
chr6 (92-146)||(29846031-29846085)
chr6 (30-120)||(31285135-31285225)
[»] scaffold0019 (1 HSPs)
scaffold0019 (24-145)||(57804-57926)
[»] chr2 (1 HSPs)
chr2 (30-153)||(3280202-3280325)
[»] chr4 (3 HSPs)
chr4 (30-141)||(5090469-5090580)
chr4 (30-125)||(18731016-18731111)
chr4 (69-125)||(18655028-18655084)
[»] chr1 (2 HSPs)
chr1 (30-125)||(267856-267951)
chr1 (20-76)||(26136508-26136564)
[»] chr8 (1 HSPs)
chr8 (53-123)||(31905624-31905694)
[»] chr5 (1 HSPs)
chr5 (100-140)||(16691423-16691463)


Alignment Details
Target: scaffold0038 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 43633 - 43508
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||| || ||| |||||| |||||  ||||||||||||||||||||||||||||||    
T  43633 agactcgagaccaacagggtaatcagcaacatatagaggaacacgattgattttgctggataaatattttactatcttctcaataaactcgtattcatat 43534  T
Q  120 ccattcctacccaatcaaataagttt 145  Q
    ||||||||||||||||||||||||||    
T  43533 ccattcctacccaatcaaataagttt 43508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 35403 - 35258
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| |||| ||| ||||||||||    
T  35403 agacttgagaccaacagggtaatcggcaacatataaaggaacatgattgatcttgtttgatacatatttgactatcttcttaatatacttgtattcatat 35304  T
Q  120 ccattcctacccaatcaaataagttttggtaaattaatgcatcacaaattca 171  Q
    |||||||||| ||  ||||||||| ||||    |||||||||||||||||||    
T  35303 ccattcctacaca--caaataagtcttgg----ttaatgcatcacaaattca 35258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 117469 - 117313
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| | | |||||  || |||| |||| ||||||||||||||||||||||||||||||     
T  117469 agactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcatag 117370  T
Q  120 ccattcctacccaatcaaataagttttggtaaattaatgcatcacaaattcacaatcacat 180  Q
    ||||||||||||||||||||||||||  |||    |||||||| |||||||||||| ||||    
T  117369 ccattcctacccaatcaaataagtttgagta----aatgcatcgcaaattcacaataacat 117313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 28117 - 27974
Alignment:
Q  29 accaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattccta 128  Q
    ||||||||||||||||||||||| |||||||||| |||| |||||||| |||| ||||| |||||||||||| ||||||||| ||||||| |||||||||    
T  28117 accaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttagatatatatttgactatcttctcgataaactcgcattcatagccattccta 28018  T
Q  129 cccaatcaaataagttttggtaaattaatgcatcacaaattcacaatca 177  Q
    |||||||||||||  ||||   | | |||||||||||||||||||||||    
T  28017 cccaatcaaataa--tttg---agtaaatgcatcacaaattcacaatca 27974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 28243471 - 28243346
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||| || ||| |||||| |||||  ||||||||||||||||||||||||||||||    
T  28243471 agactcgagaccaacagggtaatcagcaacatatagaggaacacgattgattttgctggataaatattttactatcttctcaataaactcgtattcatat 28243372  T
Q  120 ccattcctacccaatcaaataagttt 145  Q
    ||||||||||||||||||||||||||    
T  28243371 ccattcctacccaatcaaataagttt 28243346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 28297246 - 28297371
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||| |||||||||    
T  28297246 agactggagaccaacggggtaatcggcaacatataaaggaacacgattgatcttgctggatacgtatttgactatcttctcaataaactcatattcatat 28297345  T
Q  120 ccattcctacccaatcaaataagttt 145  Q
    ||||||||| ||||||||||||||||    
T  28297346 ccattcctatccaatcaaataagttt 28297371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 28514827 - 28514702
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||| |||||||||    
T  28514827 agactggagaccaacggggtaatcggcaacatataaaggaacacgattgatcttgctggatacgtatttgactatcttctcaataaactcatattcatat 28514728  T
Q  120 ccattcctacccaatcaaataagttt 145  Q
    ||||||||| ||||||||||||||||    
T  28514727 ccattcctatccaatcaaataagttt 28514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 28186069 - 28185944
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    |||||||| |||||||||| |||| |||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||     
T  28186069 agactcgataccaacagggaaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcatag 28185970  T
Q  120 ccattcctacccaatcaaataagttt 145  Q
    ||||||||||||||| ||||||||||    
T  28185969 ccattcctacccaataaaataagttt 28185944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 28235241 - 28235096
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| |||| ||| ||||||||||    
T  28235241 agacttgagaccaacagggtaatcggcaacatataaaggaacatgattgatcttgtttgatacatatttgactatcttcttaatatacttgtattcatat 28235142  T
Q  120 ccattcctacccaatcaaataagttttggtaaattaatgcatcacaaattca 171  Q
    |||||||||| ||  ||||||||| ||||    |||||||||||||||||||    
T  28235141 ccattcctacaca--caaataagtcttgg----ttaatgcatcacaaattca 28235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 28326154 - 28325998
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| | | |||||  || |||| |||| ||||||||||||||||||||||||||||||     
T  28326154 agactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcatag 28326055  T
Q  120 ccattcctacccaatcaaataagttttggtaaattaatgcatcacaaattcacaatcacat 180  Q
    ||||||||||||||||||||||||||  |||    |||||||| |||||||||||| ||||    
T  28326054 ccattcctacccaatcaaataagtttgagta----aatgcatcgcaaattcacaataacat 28325998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 28181793 - 28181668
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatat 119  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||| ||||| ||||| || |||| ||||||||| || |||||||| |||||||||    
T  28181793 agactcgagaccaacatagtaatcggcaacatataaaggaacacaattgatctttttggaaacgtatttgactatcttttcgataaactcatattcatat 28181694  T
Q  120 ccattcctacccaatcaaataagttt 145  Q
    ||||||||||||||||||||||||||    
T  28181693 ccattcctacccaatcaaataagttt 28181668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 28227619 - 28227476
Alignment:
Q  29 accaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattccta 128  Q
    ||||||||||||||||||||||| |||||||||| |||| |||||||| |||| ||||| |||||||||||| ||||||||| ||||||| |||||||||    
T  28227619 accaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttagatatatatttgactatcttctcgataaactcgcattcatagccattccta 28227520  T
Q  129 cccaatcaaataagttttggtaaattaatgcatcacaaattcacaatca 177  Q
    |||||||||||||  ||||   | | |||||||||||||||||||||||    
T  28227519 cccaatcaaataa--tttg---agtaaatgcatcacaaattcacaatca 28227476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 29826649 - 29826552
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattcct 127  Q
    |||||||||||||| |||||||  | ||| ||||| | | |||||||||| || | || |||||||||| |||||||||||||||||||| |||||||    
T  29826649 ccaacagggtaatccgcaacatgaagagggacacgctcagtcttgttggaaacttctttgactatcttcacaataaactcgtattcatattcattcct 29826552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 25539209 - 25539114
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | ||| |||||||||  |||| |||| || |||||||| |  | ||||||||||||||||||||||| ||||||||||| ||||    
T  25539209 ccaacagggtatttggccacatataaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattc 25539114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26143534 - 26143439
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | ||| |||| ||||  |||| |||| || |||||||| |  | ||||||||||||||||||||||| ||||||||||| ||||    
T  26143534 ccaacagggtatttggctacatttaaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattc 26143439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26647145 - 26647050
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | ||| |||| ||||   |||||||| ||||||||||| |  | ||||||||||||| ||||||||| ||||||||||| ||||    
T  26647145 ccaacagggtatttggctacatgtaaaatgacacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattc 26647050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26656631 - 26656536
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | |||||||| ||||  ||||||||| ||||||| ||| |  | || |||||| ||||||||||||| ||||||||||| ||||    
T  26656631 ccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatctattc 26656536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26753113 - 26753018
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | ||| |||| ||||   |||||||| ||||||||||| |  | ||||||||||||| ||||||||| ||||||||||| ||||    
T  26753113 ccaacagggtatttggctacatgtaaaatgacacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattc 26753018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26762602 - 26762507
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | |||||||| ||||  ||||||||| ||||||| ||| |  | || |||||| ||||||||||||| ||||||||||| ||||    
T  26762602 ccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatctattc 26762507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 28097959 - 28098074
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattcctac 129  Q
    ||||| ||||||||  |||||| |||| | ||| |||| |  |||||||||||||||| |||||| | |  |||||||||| ||||||||||||||||      
T  28097959 ccaacggggtaatcaacaacatgtaaaaggacatgattcaatttgttggatacatatttgactatttcccgaataaactcgaattcatatccattcctgg 28098058  T
Q  130 ccaatcaaataagttt 145  Q
    ||||| | ||||||||    
T  28098059 ccaataagataagttt 28098074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 26623937 - 26623847
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatc 120  Q
    ||||||||||| |  ||||||| ||| || |||||||| ||||||||||| |  |||| ||||||||| |||||||| || ||||||||||    
T  26623937 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc 26623847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 26729914 - 26729824
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatc 120  Q
    ||||||||||| |  ||||||| ||| || |||||||| ||||||||||| |  |||| ||||||||| |||||||| || ||||||||||    
T  26729914 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatc 26729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 31288975 - 31288917
Alignment:
Q  26 gagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacat 84  Q
    |||||||||| ||||||| ||||||| |||||||||| | |||||||||||||| ||||    
T  31288975 gagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacat 31288917  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 26959796 - 26959743
Alignment:
Q  26 gagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttgga 79  Q
    |||||||||| ||||||| ||||||| |||||||||| | ||||||||||||||    
T  26959796 gagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttgga 26959743  T

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Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 25580388 - 25580293
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | ||| || | ||||  |||| |||| || |||||||| |  | ||||||||||||||||||||||| ||||||||||| ||||    
T  25580388 ccaacagggtatttggctacgtttaaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattc 25580293  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 26884736 - 26884641
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| | ||| |||| ||||  ||||||||| || |||| ||| | || ||||||||||||| | |||||||||||||| |||| ||||    
T  26884736 ccaacagggtatttggctacatgtaaaacaacacgattgattttgtcggagatatcttcgactatcttcccgataaactcgtattcgtatctattc 26884641  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 27530817 - 27530912
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    |||||||| || | |||||||| ||| ||  ||||| ||||| ||||||| |  | ||||||||||||  ||||||||||||||||||||| ||||    
T  27530817 ccaacaggatatttggcaacatctaagggctcacgactaatcctgttggaaatgtcttcgactatctttccaataaactcgtattcatatctattc 27530912  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 28150494 - 28150439
Alignment:
Q  101 aataaactcgtattcatatccattcctacccaatcaaataagttttggtaaattaa 156  Q
    |||||||||| |||||||||||||||| |||||| | ||||||||  |||||||||    
T  28150494 aataaactcgaattcatatccattcctgcccaataagataagtttgagtaaattaa 28150439  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 25511575 - 25511509
Alignment:
Q  59 aacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    |||| |||| ||||||||||| |  | ||||||||||||||||||||||| ||||||| ||| ||||    
T  25511575 aacatgattgatcttgttggagatgtcttcgactatcttctcaataaacttgtattcagatctattc 25511509  T

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Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 27610636 - 27610750
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattcctac 129  Q
    ||||||||||||| |||||||| ||| ||   |||| | ||||||||||| |  |||| ||||||||   || |||||||||||||||||| |||| | |    
T  27610636 ccaacagggtaattggcaacatgtaagggttgacgactgatcttgttggagatgtatttgactatctctccagtaaactcgtattcatatctattcatgc 27610735  T
Q  130 ccaatcaaataagtt 144  Q
    ||||| | |||||||    
T  27610736 ccaataagataagtt 27610750  T

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Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 27698102 - 27698192
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatc 120  Q
    ||||||||||||| |||||||| ||| ||   |||| | ||||||||||| |  |||| ||||||||  |||||||||| |||||||||||    
T  27698102 ccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatc 27698192  T

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Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 29846031 - 29846085
Alignment:
Q  92 tatcttctcaataaactcgtattcatatccattcctacccaatcaaataagtttt 146  Q
    ||||||| |||||||||||||||||||| ||||||| ||| || | |||||||||    
T  29846031 tatcttcacaataaactcgtattcatattcattcctgcccgatgagataagtttt 29846085  T

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Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 31285225 - 31285135
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatc 120  Q
    ||||||||||||| |||||||| ||| || |||||||| ||||||||||| |  |||| |||||| |   ||||||| || ||||||||||    
T  31285225 ccaacagggtaattggcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatgtctccaataaaatcatattcatatc 31285135  T

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Target: scaffold0019 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 57804 - 57926
Alignment:
Q  24 tcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccat 123  Q
    |||| |||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||    
T  57804 tcgataccaacagggtaatcggcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgcattcatatccat 57903  T
Q  124 tcctaccc-aatcaaataagttt 145  Q
    |||||||| ||| ||||||||||    
T  57904 tcctacccaaatgaaataagttt 57926  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 153
Target Start/End: Complemental strand, 3280325 - 3280202
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattcctac 129  Q
    ||||| ||||||||| |||||| ||||||| ||||||| |||||||||||||||| || |||||| | | | ||||||| ||||| |||| ||||||| |    
T  3280325 ccaaccgggtaatcgacaacatgtaaaggagcacgatttatcttgttggatacatttttgactatatcccctataaacttgtattgatattcattcctgc 3280226  T
Q  130 ccaatcaaataagttttggtaaat 153  Q
    ||||||| ||||||||| ||||||    
T  3280225 ccaatcatataagtttttgtaaat 3280202  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 5090469 - 5090580
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattcctac 129  Q
    ||||| |||||||| ||||||| |||||||    |||| ||||||||||| ||||||  ||||||| ||| |||||||||||||||||||||| |||||     
T  5090469 ccaaccgggtaatcagcaacatgtaaaggagtgtgattgatcttgttggagacatatgtgactatcatctgaataaactcgtattcatatccagtcctat 5090568  T
Q  130 ccaatcaaataa 141  Q
    | ||||| ||||    
T  5090569 caaatcagataa 5090580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 18731016 - 18731111
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||||  |||||||| ||| ||   |||| | ||||||||||| ||||||| ||||||||| |||||||||| ||||||||||| ||||    
T  18731016 ccaacagggtaaatggcaacatgtaagggctgacgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatctattc 18731111  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 18655028 - 18655084
Alignment:
Q  69 atcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||| ||||||| |||||||||  ||||||||| ||||||||||| ||||    
T  18655028 atcttgttggagacatatttgactatctttccaataaacttgtattcatatctattc 18655084  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 267856 - 267951
Alignment:
Q  30 ccaacagggtaatcggcaacatataaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccattc 125  Q
    ||||||||||||| |||||||| ||| ||  ||||| | ||||||||||| |  |||| ||||||||   ||||||||| ||||||||||| ||||    
T  267856 ccaacagggtaattggcaacatgtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatctattc 267951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26136564 - 26136508
Alignment:
Q  20 agactcgagaccaacagggtaatcggcaacatataaaggaacacgattaatcttgtt 76  Q
    ||||||||| ||||| |||| ||||||||||| |||| ||||||| || ||||||||    
T  26136564 agactcgagcccaacggggtgatcggcaacatgtaaaagaacacggttgatcttgtt 26136508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 31905694 - 31905624
Alignment:
Q  53 taaaggaacacgattaatcttgttggatacatattcgactatcttctcaataaactcgtattcatatccat 123  Q
    ||||| ||||||||| ||||| ||||| |||| ||| || |||||  ||||||||||||| ||||||||||    
T  31905694 taaagcaacacgattcatcttcttggaaacatgttcaacaatctttccaataaactcgtactcatatccat 31905624  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 16691463 - 16691423
Alignment:
Q  100 caataaactcgtattcatatccattcctacccaatcaaata 140  Q
    |||||||||||| ||||||| ||||||||| ||||||||||    
T  16691463 caataaactcgtgttcatattcattcctacacaatcaaata 16691423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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