View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_high_8 (Length: 503)
Name: NF15126_high_8
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 865947 - 865463
Alignment:
| Q |
1 |
tacctgccatgttttgattctcacaccagtcaaggtgttctggagagtgatatcacgaacggtgacattggaaacacaggctttggtgttctcttttcca |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
865947 |
tacctgccatgttttgattctcaccccagtcaaggtgttctggagagtaacatcgcgaacggtgacattggaaacacaagctttggtgttctcttttccg |
865848 |
T |
|
| Q |
101 |
agacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagtttgtatagatacacaatcatctcctacat |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
865847 |
agacttccgatactaattccatgacctggtccacaattaacattgtgcaccaatatgttagaacaaccagtttgtatagacacacaatcatcccctacat |
865748 |
T |
|
| Q |
201 |
gatgaagaaatgatacatcatgaaatgtgttcaattcaattcttctaggaaactcatacacattttgtgaaattcttaccacaactaagtgtgctactat |
300 |
Q |
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|||||| || |||| ||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| | | |
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| T |
865747 |
gatgaaaaagtgatgcattatgaaatgtgttcaattcaattcttctagaaaactcattcaaattttgtgaaattcttaccacaactaagtgtgctgccag |
865648 |
T |
|
| Q |
301 |
agatgagcacatcttgagaattttgtaggtgaattccatctgtgttaggactatcaccaggtgatgaagttgttatatcaaagacttgaacatttgtgca |
400 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
865647 |
atatgaccacatcttgagaattttgtaggtgaattccatctgtgttaggactatcaccaggtgatgaagttgttatatcaaagacttgaacatttgtgca |
865548 |
T |
|
| Q |
401 |
tgaatcaaatttgagatgggtttgttgactgttttgaatggttataccactcacacttacaccatcacttccatagaaccttagt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
865547 |
tgaatcaaatttgagatgggtttgttgactgttttgaatggttataccactcacacttacaccatcacttccatagaaccttagt |
865463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 14738647 - 14738525
Alignment:
| Q |
74 |
acacaggctttggtgttctcttttccaagacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagttt |
173 |
Q |
| |
|
||||||||| ||||||| |||||||| | |||||| || || |||||||| || || ||||| || |||||||| || ||| ||| || |||||||||| |
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| T |
14738647 |
acacaggctctggtgttatcttttcctaaacttccaatgctgattccatgtcccggaccacagttgacattgtgtacatatacatttgagcatccagttt |
14738548 |
T |
|
| Q |
174 |
gtatagatacacaatcatctcct |
196 |
Q |
| |
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||||||| | |||||||||||| |
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| T |
14738547 |
gtatagaaatgcaatcatctcct |
14738525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 42844364 - 42844324
Alignment:
| Q |
104 |
cttccgatactaattccatgaccaggtccacaattaacatt |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
42844364 |
cttccgacactaattccatgaccaggtccacaattcacatt |
42844324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 14737791 - 14737731
Alignment:
| Q |
308 |
cacatcttgagaattttgtaggtgaattccatctgtgttaggactatcaccaggtgatgaa |
368 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| || ||||| ||||||||||| |||||| |
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|
| T |
14737791 |
cacatctttggaattctgaaggtgaattccatcggtattagggctatcaccaggagatgaa |
14737731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27295953 - 27296148
Alignment:
| Q |
1 |
tacctgccatgttttgattctcacaccagtcaaggtgttctggagagtgatatcacgaacggtgacattggaaacacaggctttggtgttctcttttcca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||| || | ||| ||| | || |||| || || ||||||||| | || || || ||||| |
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| T |
27295953 |
tacctgccatgttttgattctgacaccattcattgtgttatgcatgttgacatccctgacagtgatgtttgagacacaggctctagtattatcctttcct |
27296052 |
T |
|
| Q |
101 |
agacttccgatactaattccatgaccaggtccacaattaacattgtgcaccaatatattggaacatccagtttgtatagatacacaatcatctcct |
196 |
Q |
| |
|
|||| |||||| || |||||||| || |||||||| | |||||||| || ||| ||| || ||||||||||||||||| | ||||||||||||| |
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| T |
27296053 |
agacctccgatgctgattccatgccctggtccacagtcgacattgtgtacgtatacatttgagcatccagtttgtatagaaatacaatcatctcct |
27296148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 27296288 - 27296331
Alignment:
| Q |
324 |
tgtaggtgaattccatctgtgttaggactatcaccaggtgatga |
367 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| ||||| |
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| T |
27296288 |
tgtaagtgaattccatcagtgttaggactatcaccaggagatga |
27296331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 11532474 - 11532436
Alignment:
| Q |
98 |
ccaagacttccgatactaattccatgaccaggtccacaa |
136 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| |
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| T |
11532474 |
ccaagacttccgacactaattccatgaccaggaccacaa |
11532436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 42943877 - 42943836
Alignment:
| Q |
95 |
tttccaagacttccgatactaattccatgaccaggtccacaa |
136 |
Q |
| |
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|||||||||||||||| |||||||||||| || ||||||||| |
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| T |
42943877 |
tttccaagacttccgacactaattccatgtcccggtccacaa |
42943836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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