View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_1 (Length: 779)
Name: NF15126_low_1
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 17 - 763
Target Start/End: Complemental strand, 47050647 - 47049898
Alignment:
| Q |
17 |
cacagataagaagagacaaaagagtgatggaaacacctccctaggtt-cgaatctctaatataatatgaacttaagaaaaacacaagcatcttttaattt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050647 |
cacagataagaagagacaaaagagtgatggaaacacctccctaggtttcgaatctctaatataatatgaacttaagaaaaacacaagcatcttttaattt |
47050548 |
T |
|
| Q |
116 |
atgattgtgttatttgaacgtcaaaatatagacacgtgacaccctatatattttatctcgatgacttgcacacatttcaaaagtacaca--aaaaataaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47050547 |
atgattgtgttatttgaacgtcaaaatatagacacgtgacaccctatatattttatctcgatgacttgcacacatttcaaaagtacacataaaaaataaa |
47050448 |
T |
|
| Q |
214 |
agacaatgttttttaatatatctccactatatgaaaatgtatttggctaattggccaatgtcttataatccactttcctaataaaataattgagaaaaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050447 |
agacaatgttttttaatatatctccactatatgaaaatgtatttggctaattggccaatgtcttataatccactttcctaataaaataattgagaaaaac |
47050348 |
T |
|
| Q |
314 |
tcaatcatatatagtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacacaaatgctctgctagcaagggagtgag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050347 |
tcaatcatatatagtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacacaaatgctctgctagcaagggagtgag |
47050248 |
T |
|
| Q |
414 |
agaaccataaaaaaccaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgttcgtacaaaatgattgtgaaattgggcttcttggtgatt |
513 |
Q |
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| T |
47050247 |
agaaccataaaaaaccaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgttcgtacaaaatgattgtgaaattgggcttcttggtgatt |
47050148 |
T |
|
| Q |
514 |
ttggggatgactttggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgagtccatcgtacggtccacagttgtatctt |
613 |
Q |
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| T |
47050147 |
ttggggatgactttggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgagtccatcgtacggtccacagttgtatctt |
47050048 |
T |
|
| Q |
614 |
actttaacaaagatccaaccattgctcctggcctgctcagacttcatttccatgattgctttgtccaagtaagctaattgtatgtctggattggcagtga |
713 |
Q |
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| T |
47050047 |
actttaacaaagatccaaccattgctcctggcctgctcagacttcatttccatgattgctttgtccaagtaagctaattgtatgtctggattggcagtga |
47049948 |
T |
|
| Q |
714 |
tattgacaaaatcacgatgacaccgtgattttgttgaagcttgttgttta |
763 |
Q |
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|
| T |
47049947 |
tatcgacaaaatcacgatgacaccgtgattttgttgaagcttgttgttta |
47049898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 288 - 698
Target Start/End: Complemental strand, 47053503 - 47053096
Alignment:
| Q |
288 |
ttcctaataaaataattgagaaaaactcaatcatatatagtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacac |
387 |
Q |
| |
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|||| |||||||||||| | |||| || |||||| | |||||||||| |||| ||| || |||||||||||||||||||| ||||| |||| | |
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| T |
47053503 |
ttccgaataaaataattaaaaaaagctaaatcatttgacgtgatatctaattttccctagtgacaaaccattatatataactgaaaatca---gtgataa |
47053407 |
T |
|
| Q |
388 |
aaatgctctgctagcaagggagtgagagaaccataaaaaaccaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgt--tcgtacaaaat |
485 |
Q |
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|||| ||||| ||||||||||||||| ||| || |||| |||| ||| |||||| ||||||| |||||||||||||||||||| | | || |||||| |
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| T |
47053406 |
aaattatctgcaagcaagggagtgaga-aactatcaaaa-ccaacagtgaagttgtgtctgaattcttgtttcagtttgcattgtatagtagtccaaaat |
47053309 |
T |
|
| Q |
486 |
gattgtgaaattgggcttcttggtgattttggggatgactttggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgag |
585 |
Q |
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| T |
47053308 |
gattgtgcgattgggatccctagtgattttggtgatgactttggcagttgaagcccaactgaaaagtgggttttaatcaaattcatgtccaacagctgcg |
47053209 |
T |
|
| Q |
586 |
tccatcgtacggtccacagttgtatcttactttaacaaagatccaaccattgctcctggcctgctcagacttcatttccatgattgctttgtccaagtaa |
685 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47053208 |
cccatcttacggtccacagttgtatcttactttaacaaagatccaaccattgatccaggcctgctcaggtttcatttccatgattgctttgtccaagtaa |
47053109 |
T |
|
| Q |
686 |
gctaattgtatgt |
698 |
Q |
| |
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| T |
47053108 |
gctaagtgtatgt |
47053096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 10734559 - 10734597
Alignment:
| Q |
716 |
ttgacaaaatcacgatgacaccgtgattttgttgaagct |
754 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
10734559 |
ttgacaaaatcacaatgacaccgtgattttgttgaagct |
10734597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 754
Target Start/End: Complemental strand, 14408792 - 14408761
Alignment:
| Q |
723 |
aatcacgatgacaccgtgattttgttgaagct |
754 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14408792 |
aatcacgatgacaccgtgattttgttgaagct |
14408761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 716 - 754
Target Start/End: Original strand, 3165493 - 3165531
Alignment:
| Q |
716 |
ttgacaaaatcacgatgacaccgtgattttgttgaagct |
754 |
Q |
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|||||||||||| |||||||||||||||||||| ||||| |
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| T |
3165493 |
ttgacaaaatcatgatgacaccgtgattttgttaaagct |
3165531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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