View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_10 (Length: 464)
Name: NF15126_low_10
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_10 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 91 - 412
Target Start/End: Complemental strand, 16344454 - 16344133
Alignment:
| Q |
91 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
190 |
Q |
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| T |
16344454 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
16344355 |
T |
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| Q |
191 |
aacaaaatgccaacatatgacaaccttcagcgcaaagggctctctttcccatcaatgtgcagtttatgtggcatgcagtctgaaacctcgcatcatttat |
290 |
Q |
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| T |
16344354 |
aacaaaatgccaacatatgacaaccttcagcgcaaagggctctctttcccatcaatgtgcagtttatgtggcatgcagtctgaaacctcgcatcatttat |
16344255 |
T |
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| Q |
291 |
tccttcaaagttctttctctccgaccttatcgaactggcttacaaatataatcagcatgaacatcaaccttacctcagtgctaaccattttagatacttg |
390 |
Q |
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|||||||| |||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16344254 |
tccttcaatgttctttctctctgaccttatggaactggcttacaaatataatcaacatgaacatcaaccttacctcagtgctaaccattttagatacttg |
16344155 |
T |
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| Q |
391 |
caagagaggatgaagtcctcaa |
412 |
Q |
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| T |
16344154 |
caagagaggatggagtcctcaa |
16344133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 16344505 - 16344455
Alignment:
| Q |
6 |
tcactattccttggaggcataaagctgataagttcatatggaaagacaccc |
56 |
Q |
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| T |
16344505 |
tcactattccttggaggcataaagctgataagttcatatggaaagacaccc |
16344455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 29910 - 30031
Alignment:
| Q |
128 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaacatatgacaaccttcagcgcaaag |
227 |
Q |
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| T |
29910 |
aagatcatttggaactcaacaattcccccatctaaatcttttcatgtttggagaatgattcacaacaagatgccaactgatgaaaatcttcagctcagag |
30009 |
T |
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| Q |
228 |
ggctctctttcccatcaatgtg |
249 |
Q |
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| T |
30010 |
gtttatctttcccatcaatgtg |
30031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 12043445 - 12043322
Alignment:
| Q |
128 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaacatatgacaaccttcagcgcaaag |
227 |
Q |
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|||||||| ||||||||| |||||| || ||||||||||||||| | ||||||||||| ||| | || || ||||| |||| ||||| || | || || |
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| T |
12043445 |
aagataatatggaactcaacaattcttccatcaaaatcttttcatatgtggagaatgatccatgagaagattccaaccgatgaaaacctgcatctcagag |
12043346 |
T |
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| Q |
228 |
ggctctctttcccatcaatgtgca |
251 |
Q |
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| T |
12043345 |
gcttatctttcccatcaatgtgca |
12043322 |
T |
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