View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15126_low_11 (Length: 460)
Name: NF15126_low_11
Description: NF15126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15126_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 205 - 447
Target Start/End: Original strand, 46552855 - 46553097
Alignment:
| Q |
205 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcatta |
304 |
Q |
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| T |
46552855 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcatta |
46552954 |
T |
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| Q |
305 |
aatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaattg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46552955 |
aatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcgaagattttccttctgttcaaatgccacttgagtggctaatccaattg |
46553054 |
T |
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| Q |
405 |
gttcctatgctgaaaacaagagcattctctatttcttcttctc |
447 |
Q |
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| T |
46553055 |
gttcctatgctgaaaacaagagcattctctatttcttcttctc |
46553097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 46552632 - 46552821
Alignment:
| Q |
20 |
acctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtcaattaattgtgcattattttgctttgaatcaattcactagttttttat |
119 |
Q |
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| T |
46552632 |
acctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtcaatcaattgtgcattattttgctttgaatcaattcactagttttttat |
46552731 |
T |
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| Q |
120 |
gcattgaagtctttatctaactgattttggactcttttcttactaagatgttaagcaacttcgtactttgtagaaaatatttatgatata |
209 |
Q |
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| T |
46552732 |
gcattgaagtctttatctaactgattttggactcttttcttactaagatgttaagcaacttcgtactttgtagaaaatatttatgatata |
46552821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 205 - 447
Target Start/End: Original strand, 1029274 - 1029517
Alignment:
| Q |
205 |
atatattttgaagccataatttgtgacattctatgcttgttttcttgcttgtttagatagtccttgattatat-gctttcattttcttgtcagtttcatt |
303 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1029274 |
atatattttgaagccataatctgtgacattctatgctcgttttcttgcttgtttagatagtccttgattatattgctttcattttcttgtcagtttcatt |
1029373 |
T |
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| Q |
304 |
aaatcaatttcatgcatatatttgttttattttttgcggtaaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaatt |
403 |
Q |
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| T |
1029374 |
aaatcaattttatgcatatatttgttttattttttgcggtaaaaaaggtgctcgaagattttccttctgttcaaatgccacttgagtggctaatccaatt |
1029473 |
T |
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| Q |
404 |
ggttcctatgctgaaaacaagagcattctctatttcttcttctc |
447 |
Q |
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| T |
1029474 |
ggttcctatgctgaaaacaagagcattctctatttcttcttctc |
1029517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 1029038 - 1029235
Alignment:
| Q |
20 |
acctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtcaattaattgtgcattattttgctttgaatcaattcactagttttttat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029038 |
acctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtcaatcaattgtgcattattttgctttgaatcaattcactagttttttat |
1029137 |
T |
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| Q |
120 |
gcattgaagtctttatctaactgattttggactcttttcttactaagatgttaagcaacttcgtactttgtagaaaatatttatgatatattttgaag |
217 |
Q |
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| T |
1029138 |
gcattgaagtctttatctaactgattttggactcttttcttactaagatgttaagcaacttcaaactttgtagaaaatatttatgatatattttgaag |
1029235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 245 - 447
Target Start/End: Original strand, 40831833 - 40832036
Alignment:
| Q |
245 |
tttcttgcttgtttagatagtccttgattatatgctttcattttcttgtcagtttcattaaatcaatttcatgcatatatttgttttattttttgcggt- |
343 |
Q |
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||||||| |||||||||| || |||||||||||||||||||||||| | || ||||||||||||||| ||||||||| |||| | |||||| ||| |
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| T |
40831833 |
tttcttgtctgtttagatattcgttgattatatgctttcattttcttctttgtatcattaaatcaattttatgcatatacatgttctgtttttttgggtt |
40831932 |
T |
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| Q |
344 |
aaaaaaggtgctcaaagattttccttctgttcaaatgccacttgagtggctaatccaattggttcctatgctgaaaacaagagcattctctatttcttct |
443 |
Q |
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| T |
40831933 |
aaaaaaggtactgaaggattttccttctgtacaaatgccacttgagtggctaatccaattggttcctatgctaaaaaagagagaattctccatatcttct |
40832032 |
T |
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| Q |
444 |
tctc |
447 |
Q |
| |
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|||| |
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| T |
40832033 |
tctc |
40832036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 40831757 - 40831809
Alignment:
| Q |
22 |
ctgtaccaatacaaccagaaggagaggagaactgttcttgaggtgaggtcaat |
74 |
Q |
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| T |
40831757 |
ctgtaccaatacaaccagaaagagaggagaactgttcttgaggtgaggtcaat |
40831809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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